Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
COL5A3P25940 RPL23AP45-201ENST00000476406 468 ntBASIC3.12□□□□□ -1.91
COL5A3P25940 AC135999.1-201ENST00000478962 479 ntBASIC3.12□□□□□ -1.91
COL5A3P25940 GAPDHP39-201ENST00000481866 979 ntBASIC3.12□□□□□ -1.91
COL5A3P25940 FAM172BP-201ENST00000487497 1089 ntBASIC3.12□□□□□ -1.91
COL5A3P25940 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.12□□□□□ -1.91
COL5A3P25940 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC3.12□□□□□ -1.91
COL5A3P25940 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC3.12□□□□□ -1.91
COL5A3P25940 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.12□□□□□ -1.91
COL5A3P25940 RPL23AP84-201ENST00000571193 464 ntBASIC3.12□□□□□ -1.91
COL5A3P25940 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC3.12□□□□□ -1.91
COL5A3P25940 AC004696.1-201ENST00000614345 607 ntBASIC3.12□□□□□ -1.91
COL5A3P25940 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.12□□□□□ -1.91
COL5A3P25940 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC3.12□□□□□ -1.91
COL5A3P25940 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
COL5A3P25940 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
COL5A3P25940 AC093908.1-201ENST00000623125 8092 ntBASIC3.12□□□□□ -1.91
COL5A3P25940 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
COL5A3P25940 AC069528.2-201ENST00000624849 1991 ntBASIC3.12□□□□□ -1.91
COL5A3P25940 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
COL5A3P25940 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
COL5A3P25940 GTF2H2B-203ENST00000508065 1432 ntBASIC3.11□□□□□ -1.91
COL5A3P25940 OR5AQ1P-202ENST00000641257 1534 ntBASIC3.11□□□□□ -1.91
COL5A3P25940 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
COL5A3P25940 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
COL5A3P25940 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
COL5A3P25940 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
COL5A3P25940 AL662791.1-201ENST00000441992 928 ntBASIC3.11□□□□□ -1.91
COL5A3P25940 AC096638.1-201ENST00000444678 216 ntBASIC3.11□□□□□ -1.91
COL5A3P25940 ST13P20-201ENST00000447996 1065 ntBASIC3.11□□□□□ -1.91
COL5A3P25940 RPL21P71-201ENST00000465598 459 ntBASIC3.11□□□□□ -1.91
COL5A3P25940 RN7SL297P-201ENST00000483161 293 ntBASIC3.11□□□□□ -1.91
COL5A3P25940 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.11□□□□□ -1.91
COL5A3P25940 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC3.11□□□□□ -1.91
COL5A3P25940 NPM1P35-201ENST00000533043 868 ntBASIC3.11□□□□□ -1.91
COL5A3P25940 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
COL5A3P25940 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.11□□□□□ -1.91
COL5A3P25940 AC066616.2-201ENST00000559334 1481 ntBASIC3.11□□□□□ -1.91
COL5A3P25940 SNORD114-1-201ENST00000362705 72 ntBASIC3.1□□□□□ -1.91
COL5A3P25940 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.1□□□□□ -1.91
COL5A3P25940 RNU6-178P-201ENST00000384631 104 ntBASIC3.1□□□□□ -1.91
COL5A3P25940 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
COL5A3P25940 USP9YP20-201ENST00000419224 558 ntBASIC3.1□□□□□ -1.91
COL5A3P25940 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC3.1□□□□□ -1.91
COL5A3P25940 HMGB3P12-201ENST00000438745 556 ntBASIC3.1□□□□□ -1.91
COL5A3P25940 AP000857.1-201ENST00000532151 543 ntBASIC3.1□□□□□ -1.91
COL5A3P25940 AC091515.1-201ENST00000548110 679 ntBASIC3.1□□□□□ -1.91
COL5A3P25940 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC3.1□□□□□ -1.91
COL5A3P25940 AL021368.2-201ENST00000606125 5352 ntBASIC3.1□□□□□ -1.91
COL5A3P25940 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
COL5A3P25940 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
COL5A3P25940 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
COL5A3P25940 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.1□□□□□ -1.91
COL5A3P25940 MIR137-201ENST00000385223 102 ntBASIC3.1□□□□□ -1.91
COL5A3P25940 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC3.1□□□□□ -1.91
COL5A3P25940 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
COL5A3P25940 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC3.1□□□□□ -1.91
COL5A3P25940 AC068305.1-201ENST00000497406 726 ntBASIC3.1□□□□□ -1.91
COL5A3P25940 RN7SKP244-201ENST00000516513 307 ntBASIC3.1□□□□□ -1.91
COL5A3P25940 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.1□□□□□ -1.91
COL5A3P25940 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.1□□□□□ -1.91
COL5A3P25940 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC3.1□□□□□ -1.91
COL5A3P25940 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC3.1□□□□□ -1.91
COL5A3P25940 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
COL5A3P25940 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
COL5A3P25940 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
COL5A3P25940 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.09□□□□□ -1.91
COL5A3P25940 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
COL5A3P25940 RNU6ATAC15P-201ENST00000408279 121 ntBASIC3.09□□□□□ -1.91
COL5A3P25940 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.09□□□□□ -1.91
COL5A3P25940 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
COL5A3P25940 AC007064.1-201ENST00000412238 351 ntBASIC3.09□□□□□ -1.91
COL5A3P25940 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.09□□□□□ -1.91
COL5A3P25940 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.09□□□□□ -1.91
COL5A3P25940 RPL7P12-201ENST00000446719 750 ntBASIC3.09□□□□□ -1.91
COL5A3P25940 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.09□□□□□ -1.91
COL5A3P25940 CKS1BP1-201ENST00000555221 240 ntBASIC3.09□□□□□ -1.91
COL5A3P25940 MIR5092-201ENST00000583139 88 ntBASIC3.09□□□□□ -1.91
COL5A3P25940 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.09□□□□□ -1.91
COL5A3P25940 Z99129.2-201ENST00000619967 314 ntBASIC3.09□□□□□ -1.91
COL5A3P25940 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
COL5A3P25940 HSPA8P4-201ENST00000511877 1920 ntBASIC3.09□□□□□ -1.91
COL5A3P25940 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.09□□□□□ -1.91
COL5A3P25940 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.09□□□□□ -1.92
COL5A3P25940 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
COL5A3P25940 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
COL5A3P25940 AL590004.2-201ENST00000404787 371 ntBASIC3.08□□□□□ -1.92
COL5A3P25940 RN7SKP140-201ENST00000411196 284 ntBASIC3.08□□□□□ -1.92
COL5A3P25940 AL159169.1-201ENST00000421119 127 ntBASIC3.08□□□□□ -1.92
COL5A3P25940 AC013410.1-201ENST00000436223 1232 ntBASIC3.08□□□□□ -1.92
COL5A3P25940 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.08□□□□□ -1.92
COL5A3P25940 RPL30P9-201ENST00000465586 330 ntBASIC3.08□□□□□ -1.92
COL5A3P25940 KCTD9P5-201ENST00000504141 1170 ntBASIC3.08□□□□□ -1.92
COL5A3P25940 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
COL5A3P25940 ACTR6P1-201ENST00000514311 1104 ntBASIC3.08□□□□□ -1.92
COL5A3P25940 VTA1P2-201ENST00000520205 911 ntBASIC3.08□□□□□ -1.92
COL5A3P25940 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC3.08□□□□□ -1.92
COL5A3P25940 AL109741.3-201ENST00000561748 592 ntBASIC3.08□□□□□ -1.92
COL5A3P25940 AC055876.1-202ENST00000567053 138 ntBASIC3.08□□□□□ -1.92
COL5A3P25940 AL354950.1-201ENST00000614150 568 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 134 ms