Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC6.42□□□□□ -1.38
HLA-CQ95604 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
HLA-CQ95604 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC6.42□□□□□ -1.38
HLA-CQ95604 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC6.42□□□□□ -1.38
HLA-CQ95604 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
HLA-CQ95604 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
HLA-CQ95604 RNF217-AS1-201ENST00000439075 4507 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
HLA-CQ95604 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
HLA-CQ95604 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
HLA-CQ95604 AGO1-202ENST00000373206 3996 ntTSL 2 BASIC6.42□□□□□ -1.38
HLA-CQ95604 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC6.41□□□□□ -1.38
HLA-CQ95604 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC6.41□□□□□ -1.38
HLA-CQ95604 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
HLA-CQ95604 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC6.41□□□□□ -1.38
HLA-CQ95604 AC012254.3-201ENST00000591183 2117 ntBASIC6.41□□□□□ -1.38
HLA-CQ95604 PABPC1P6-201ENST00000445594 1829 ntBASIC6.41□□□□□ -1.38
HLA-CQ95604 RBM41-202ENST00000372487 2579 ntAPPRIS ALT1 TSL 2 BASIC6.41□□□□□ -1.38
HLA-CQ95604 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
HLA-CQ95604 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC6.41□□□□□ -1.38
HLA-CQ95604 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
HLA-CQ95604 RNY1-201ENST00000364228 113 ntBASIC6.41□□□□□ -1.38
HLA-CQ95604 Y_RNA.464-201ENST00000384282 110 ntBASIC6.41□□□□□ -1.38
HLA-CQ95604 TRAV19-201ENST00000390447 467 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
HLA-CQ95604 RAC1P3-201ENST00000416129 580 ntBASIC6.41□□□□□ -1.38
HLA-CQ95604 CYCSP52-201ENST00000422857 310 ntBASIC6.41□□□□□ -1.38
HLA-CQ95604 AL662874.1-201ENST00000426065 230 ntBASIC6.41□□□□□ -1.38
HLA-CQ95604 HMGB3P24-201ENST00000433260 622 ntBASIC6.41□□□□□ -1.38
HLA-CQ95604 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC6.41□□□□□ -1.38
HLA-CQ95604 EEF1B2P6-201ENST00000445713 673 ntBASIC6.41□□□□□ -1.38
HLA-CQ95604 AC108161.1-201ENST00000461060 402 ntBASIC6.41□□□□□ -1.38
HLA-CQ95604 AC069499.1-201ENST00000489433 509 ntBASIC6.41□□□□□ -1.38
HLA-CQ95604 RN7SL57P-201ENST00000493687 290 ntBASIC6.41□□□□□ -1.38
HLA-CQ95604 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC6.41□□□□□ -1.38
HLA-CQ95604 RFPL4AP5-201ENST00000514977 504 ntBASIC6.41□□□□□ -1.38
HLA-CQ95604 SNORA31.6-201ENST00000516241 130 ntBASIC6.41□□□□□ -1.38
HLA-CQ95604 RNU6-911P-201ENST00000516523 104 ntBASIC6.41□□□□□ -1.38
HLA-CQ95604 AC144568.1-201ENST00000520139 137 ntBASIC6.41□□□□□ -1.38
HLA-CQ95604 AP003733.2-201ENST00000529409 171 ntBASIC6.41□□□□□ -1.38
HLA-CQ95604 AL049839.1-201ENST00000556151 657 ntBASIC6.41□□□□□ -1.38
HLA-CQ95604 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC6.41□□□□□ -1.38
HLA-CQ95604 AC006600.1-201ENST00000572529 153 ntBASIC6.41□□□□□ -1.38
HLA-CQ95604 AC012433.1-201ENST00000588916 398 ntBASIC6.41□□□□□ -1.38
HLA-CQ95604 AC010201.1-201ENST00000605051 540 ntBASIC6.41□□□□□ -1.38
HLA-CQ95604 AL159153.1-201ENST00000619688 317 ntBASIC6.41□□□□□ -1.38
HLA-CQ95604 AC131009.3-201ENST00000621809 287 ntBASIC6.41□□□□□ -1.38
HLA-CQ95604 AC110801.1-201ENST00000623590 212 ntBASIC6.41□□□□□ -1.38
HLA-CQ95604 CYP4F35P-202ENST00000636121 390 ntBASIC6.41□□□□□ -1.38
HLA-CQ95604 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC6.41□□□□□ -1.38
HLA-CQ95604 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC6.41□□□□□ -1.38
HLA-CQ95604 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
HLA-CQ95604 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
HLA-CQ95604 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC6.41□□□□□ -1.38
HLA-CQ95604 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC6.41□□□□□ -1.38
HLA-CQ95604 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC6.41□□□□□ -1.38
HLA-CQ95604 TCF7L2-220ENST00000543371 4037 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
HLA-CQ95604 UBE2V1-201ENST00000340309 2536 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
HLA-CQ95604 PPFIBP1-202ENST00000318304 6001 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
HLA-CQ95604 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC6.41□□□□□ -1.38
HLA-CQ95604 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
HLA-CQ95604 ZNF257-203ENST00000594947 3874 ntAPPRIS P1 TSL 4 BASIC6.41□□□□□ -1.38
HLA-CQ95604 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
HLA-CQ95604 ABCD3-202ENST00000370214 3538 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
HLA-CQ95604 FBXL13-201ENST00000313221 2744 ntTSL 2 BASIC6.41□□□□□ -1.38
HLA-CQ95604 EOGT-210ENST00000615922 1931 ntBASIC6.4□□□□□ -1.38
HLA-CQ95604 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC6.4□□□□□ -1.38
HLA-CQ95604 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.38
HLA-CQ95604 IQCB2P-201ENST00000401788 1633 ntBASIC6.4□□□□□ -1.38
HLA-CQ95604 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.38
HLA-CQ95604 CNTNAP4-206ENST00000478060 3708 ntTSL 5 BASIC6.4□□□□□ -1.38
HLA-CQ95604 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
HLA-CQ95604 MIR335-201ENST00000362173 94 ntBASIC6.4□□□□□ -1.38
HLA-CQ95604 RNA5SP507-201ENST00000363603 121 ntBASIC6.4□□□□□ -1.38
HLA-CQ95604 MIR199B-201ENST00000384849 110 ntBASIC6.4□□□□□ -1.38
HLA-CQ95604 MIR625-201ENST00000385047 85 ntBASIC6.4□□□□□ -1.38
HLA-CQ95604 RPL23AP27-201ENST00000415161 451 ntBASIC6.4□□□□□ -1.38
HLA-CQ95604 AL158071.1-201ENST00000430315 461 ntBASIC6.4□□□□□ -1.38
HLA-CQ95604 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
HLA-CQ95604 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC6.4□□□□□ -1.38
HLA-CQ95604 FHP1-201ENST00000442741 703 ntBASIC6.4□□□□□ -1.38
HLA-CQ95604 AC010655.1-201ENST00000449336 292 ntBASIC6.4□□□□□ -1.38
HLA-CQ95604 RPL37P6-201ENST00000460682 294 ntBASIC6.4□□□□□ -1.38
HLA-CQ95604 AC008481.1-201ENST00000463278 396 ntBASIC6.4□□□□□ -1.38
HLA-CQ95604 RN7SL269P-201ENST00000467795 305 ntBASIC6.4□□□□□ -1.38
HLA-CQ95604 FTH1P24-201ENST00000503502 462 ntBASIC6.4□□□□□ -1.38
HLA-CQ95604 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC6.4□□□□□ -1.38
HLA-CQ95604 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC6.4□□□□□ -1.38
HLA-CQ95604 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC6.4□□□□□ -1.38
HLA-CQ95604 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC6.4□□□□□ -1.38
HLA-CQ95604 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC6.4□□□□□ -1.38
HLA-CQ95604 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC6.4□□□□□ -1.38
HLA-CQ95604 OR4H6P-201ENST00000563771 921 ntBASIC6.4□□□□□ -1.38
HLA-CQ95604 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.38
HLA-CQ95604 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC6.4□□□□□ -1.38
HLA-CQ95604 FKBP1AP1-201ENST00000594588 318 ntBASIC6.4□□□□□ -1.38
HLA-CQ95604 AL390123.1-201ENST00000603216 237 ntBASIC6.4□□□□□ -1.38
HLA-CQ95604 AL591516.1-201ENST00000611326 274 ntBASIC6.4□□□□□ -1.38
HLA-CQ95604 MIR6820-201ENST00000611508 62 ntBASIC6.4□□□□□ -1.38
HLA-CQ95604 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
HLA-CQ95604 KCNMB3P1-202ENST00000493696 3389 ntBASIC6.4□□□□□ -1.38
HLA-CQ95604 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 139.6 ms