Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 RN7SKP58-201ENST00000411010 305 ntBASIC1.84□□□□□ -2.11
PRKDCP78527 RPLP0P7-201ENST00000416050 667 ntBASIC1.84□□□□□ -2.11
PRKDCP78527 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC1.84□□□□□ -2.11
PRKDCP78527 BTG3P1-201ENST00000435859 716 ntBASIC1.84□□□□□ -2.11
PRKDCP78527 RPS26P30-201ENST00000443431 335 ntBASIC1.84□□□□□ -2.11
PRKDCP78527 AC112673.1-201ENST00000513168 575 ntBASIC1.84□□□□□ -2.11
PRKDCP78527 MIR449C-201ENST00000516047 92 ntBASIC1.84□□□□□ -2.11
PRKDCP78527 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC1.84□□□□□ -2.11
PRKDCP78527 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
PRKDCP78527 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
PRKDCP78527 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.84□□□□□ -2.11
PRKDCP78527 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC1.84□□□□□ -2.11
PRKDCP78527 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC1.84□□□□□ -2.11
PRKDCP78527 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
PRKDCP78527 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC1.84□□□□□ -2.11
PRKDCP78527 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.12
PRKDCP78527 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC1.84□□□□□ -2.12
PRKDCP78527 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC1.84□□□□□ -2.12
PRKDCP78527 NDUFA5P4-201ENST00000436704 385 ntBASIC1.84□□□□□ -2.12
PRKDCP78527 AP000936.3-201ENST00000438127 255 ntBASIC1.84□□□□□ -2.12
PRKDCP78527 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC1.84□□□□□ -2.12
PRKDCP78527 AC006539.3-201ENST00000454258 129 ntBASIC1.84□□□□□ -2.12
PRKDCP78527 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC1.84□□□□□ -2.12
PRKDCP78527 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC1.84□□□□□ -2.12
PRKDCP78527 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC1.84□□□□□ -2.12
PRKDCP78527 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.84□□□□□ -2.12
PRKDCP78527 AC128687.1-201ENST00000605304 619 ntBASIC1.84□□□□□ -2.12
PRKDCP78527 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC1.84□□□□□ -2.12
PRKDCP78527 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC1.84□□□□□ -2.12
PRKDCP78527 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC1.84□□□□□ -2.12
PRKDCP78527 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.12
PRKDCP78527 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.12
PRKDCP78527 ZNF603P-201ENST00000405613 487 ntBASIC1.84□□□□□ -2.12
PRKDCP78527 RPS7P13-201ENST00000413955 498 ntBASIC1.84□□□□□ -2.12
PRKDCP78527 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC1.84□□□□□ -2.12
PRKDCP78527 NANOGP5-201ENST00000424456 877 ntBASIC1.84□□□□□ -2.12
PRKDCP78527 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC1.84□□□□□ -2.12
PRKDCP78527 BX679664.1-201ENST00000434429 253 ntBASIC1.84□□□□□ -2.12
PRKDCP78527 NARSP2-201ENST00000518524 679 ntBASIC1.84□□□□□ -2.12
PRKDCP78527 NDUFA5P6-201ENST00000542110 379 ntBASIC1.84□□□□□ -2.12
PRKDCP78527 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC1.84□□□□□ -2.12
PRKDCP78527 AC006111.3-201ENST00000622137 383 ntBASIC1.84□□□□□ -2.12
PRKDCP78527 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.84□□□□□ -2.12
PRKDCP78527 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC1.84□□□□□ -2.12
PRKDCP78527 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC1.84□□□□□ -2.12
PRKDCP78527 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC1.83□□□□□ -2.12
PRKDCP78527 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC1.83□□□□□ -2.12
PRKDCP78527 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC1.83□□□□□ -2.12
PRKDCP78527 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC1.83□□□□□ -2.12
PRKDCP78527 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC1.83□□□□□ -2.12
PRKDCP78527 RPS6P2-201ENST00000454208 705 ntBASIC1.83□□□□□ -2.12
PRKDCP78527 AP000893.1-201ENST00000474462 794 ntBASIC1.83□□□□□ -2.12
PRKDCP78527 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC1.83□□□□□ -2.12
PRKDCP78527 CR381653.2-201ENST00000624041 768 ntBASIC1.83□□□□□ -2.12
PRKDCP78527 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC1.83□□□□□ -2.12
PRKDCP78527 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC1.83□□□□□ -2.12
PRKDCP78527 AC107081.3-201ENST00000612715 2034 ntBASIC1.83□□□□□ -2.12
PRKDCP78527 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
PRKDCP78527 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC1.83□□□□□ -2.12
PRKDCP78527 SCN1A-220ENST00000641603 12506 ntBASIC1.83□□□□□ -2.12
PRKDCP78527 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
PRKDCP78527 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
PRKDCP78527 AL451074.3-201ENST00000437709 472 ntBASIC1.83□□□□□ -2.12
PRKDCP78527 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC1.83□□□□□ -2.12
PRKDCP78527 NPM1P49-201ENST00000448027 714 ntBASIC1.83□□□□□ -2.12
PRKDCP78527 ST13P14-201ENST00000474095 734 ntBASIC1.83□□□□□ -2.12
PRKDCP78527 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC1.83□□□□□ -2.12
PRKDCP78527 AC117522.2-201ENST00000510049 657 ntBASIC1.83□□□□□ -2.12
PRKDCP78527 PANCR-202ENST00000513690 448 ntTSL 2 BASIC1.83□□□□□ -2.12
PRKDCP78527 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC1.83□□□□□ -2.12
PRKDCP78527 OOSP1P2-201ENST00000579644 351 ntBASIC1.83□□□□□ -2.12
PRKDCP78527 AL162233.1-201ENST00000620014 944 ntBASIC1.83□□□□□ -2.12
PRKDCP78527 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC1.83□□□□□ -2.12
PRKDCP78527 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
PRKDCP78527 NEAT1-202ENST00000501122 22743 ntBASIC1.83□□□□□ -2.12
PRKDCP78527 AL512646.1-201ENST00000269395 1077 ntBASIC1.83□□□□□ -2.12
PRKDCP78527 RNU4-44P-201ENST00000363050 141 ntBASIC1.83□□□□□ -2.12
PRKDCP78527 AC011753.1-201ENST00000451001 220 ntBASIC1.83□□□□□ -2.12
PRKDCP78527 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC1.83□□□□□ -2.12
PRKDCP78527 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC1.83□□□□□ -2.12
PRKDCP78527 AC021733.2-201ENST00000518830 497 ntBASIC1.83□□□□□ -2.12
PRKDCP78527 AP001521.1-201ENST00000609150 300 ntBASIC1.83□□□□□ -2.12
PRKDCP78527 U4.3-201ENST00000621047 82 ntBASIC1.83□□□□□ -2.12
PRKDCP78527 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
PRKDCP78527 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
PRKDCP78527 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC1.82□□□□□ -2.12
PRKDCP78527 Y_RNA.122-201ENST00000363331 96 ntBASIC1.82□□□□□ -2.12
PRKDCP78527 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
PRKDCP78527 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC1.82□□□□□ -2.12
PRKDCP78527 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC1.82□□□□□ -2.12
PRKDCP78527 HMGB1P25-201ENST00000468402 607 ntBASIC1.82□□□□□ -2.12
PRKDCP78527 AC003982.1-202ENST00000469928 248 ntBASIC1.82□□□□□ -2.12
PRKDCP78527 AC107222.1-201ENST00000510899 637 ntBASIC1.82□□□□□ -2.12
PRKDCP78527 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC1.82□□□□□ -2.12
PRKDCP78527 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC1.82□□□□□ -2.12
PRKDCP78527 MIR30E-201ENST00000362104 92 ntBASIC1.82□□□□□ -2.12
PRKDCP78527 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC1.82□□□□□ -2.12
PRKDCP78527 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC1.82□□□□□ -2.12
PRKDCP78527 GTF2IP23-201ENST00000423746 351 ntBASIC1.82□□□□□ -2.12
PRKDCP78527 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 94.1 ms