Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AC021146.4-201ENST00000309229 279 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 Y_RNA.41-201ENST00000362646 102 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 RNU1-130P-201ENST00000363930 160 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 SNORA40.3-201ENST00000390964 122 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 SNORD115.1-201ENST00000391109 76 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 RNU6-248P-201ENST00000410720 107 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 MTCO1P17-201ENST00000411522 491 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 RAD23BP2-201ENST00000416003 1207 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 RPEP3-201ENST00000425462 676 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 RPL18P10-201ENST00000425606 538 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 OR4F13P-201ENST00000428478 931 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 NPM1P34-201ENST00000428821 893 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 RPL23AP1-201ENST00000428990 471 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 OR2B8P-201ENST00000432841 938 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 MTND1P4-201ENST00000435196 415 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 NDUFAF4P4-201ENST00000454883 502 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 RPL9P33-201ENST00000484311 566 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 DEFB109F-201ENST00000491870 277 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AC023424.2-201ENST00000493479 777 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AC138853.1-201ENST00000503549 823 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AF131216.2-201ENST00000512316 564 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AC108064.1-201ENST00000513791 460 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 MTND4LP18-201ENST00000526864 291 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AC092470.1-201ENST00000546187 132 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 RN7SL176P-201ENST00000580352 264 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AC090312.1-201ENST00000580637 348 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AC091178.1-203ENST00000584586 279 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AL353997.4-201ENST00000586196 166 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 HMGB2P1-201ENST00000591146 634 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AC006566.1-201ENST00000608943 513 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AC138749.5-201ENST00000611461 208 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AC008498.1-201ENST00000613012 531 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AC116165.2-201ENST00000616705 206 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AC131238.1-201ENST00000617135 328 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AC095031.1-201ENST00000623685 672 ntBASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 NFIB-202ENST00000380924 840 ntTSL 5 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 RNU6-259P-201ENST00000383999 107 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 Y_RNA.582-201ENST00000391023 95 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 RNA5SP397-201ENST00000391323 118 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AIMP1P1-201ENST00000418670 937 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 BX890604.2-201ENST00000427883 474 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 RSU1P2-202ENST00000437884 485 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AC091862.1-201ENST00000438016 1100 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 BX322784.1-201ENST00000455793 1077 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AL136126.1-201ENST00000473603 402 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AC013356.1-201ENST00000489027 564 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AC112204.1-201ENST00000502591 103 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AC093767.1-201ENST00000504523 156 ntBASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.43□□□□□ -1.7
PTCHD3Q3KNS1 AC016065.2-201ENST00000514530 444 ntBASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms