Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC10□□□□□ -0.81
MSH5O43196 CASP10-203ENST00000313728 1521 ntTSL 1 (best) BASIC10□□□□□ -0.81
MSH5O43196 RIF1-205ENST00000444746 7897 ntAPPRIS P3 TSL 1 (best) BASIC10□□□□□ -0.81
MSH5O43196 AP1G1-201ENST00000299980 6969 ntAPPRIS P3 TSL 1 (best) BASIC10□□□□□ -0.81
MSH5O43196 AL589743.1-201ENST00000551932 2712 ntBASIC10□□□□□ -0.81
MSH5O43196 PUM1-205ENST00000424085 4631 ntTSL 5 BASIC10□□□□□ -0.81
MSH5O43196 MAP3K20-AS1-203ENST00000423106 2538 ntTSL 1 (best) BASIC10□□□□□ -0.81
MSH5O43196 TAOK1-202ENST00000536202 4068 ntTSL 1 (best) BASIC10□□□□□ -0.81
MSH5O43196 OR51M1-203ENST00000642046 4092 ntAPPRIS P1 BASIC10□□□□□ -0.81
MSH5O43196 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC10□□□□□ -0.81
MSH5O43196 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC9.99□□□□□ -0.81
MSH5O43196 KIAA0100-201ENST00000389003 6852 ntAPPRIS ALT2 TSL 5 BASIC9.99□□□□□ -0.81
MSH5O43196 KIAA0100-203ENST00000544884 6856 ntAPPRIS ALT2 TSL 1 (best) BASIC9.99□□□□□ -0.81
MSH5O43196 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
MSH5O43196 MGAM-208ENST00000549489 6525 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
MSH5O43196 KIAA0753-201ENST00000361413 4859 ntAPPRIS P2 TSL 1 (best) BASIC9.99□□□□□ -0.81
MSH5O43196 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC9.99□□□□□ -0.81
MSH5O43196 MIR526A2-201ENST00000390198 65 ntBASIC9.99□□□□□ -0.81
MSH5O43196 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC9.99□□□□□ -0.81
MSH5O43196 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC9.99□□□□□ -0.81
MSH5O43196 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC9.99□□□□□ -0.81
MSH5O43196 MRPS21P2-201ENST00000424704 264 ntBASIC9.99□□□□□ -0.81
MSH5O43196 AL353689.1-201ENST00000438895 199 ntBASIC9.99□□□□□ -0.81
MSH5O43196 RN7SL861P-201ENST00000473793 285 ntBASIC9.99□□□□□ -0.81
MSH5O43196 RN7SL516P-201ENST00000496127 297 ntBASIC9.99□□□□□ -0.81
MSH5O43196 APOOP4-201ENST00000513530 597 ntBASIC9.99□□□□□ -0.81
MSH5O43196 IGHVII-78-1-201ENST00000521105 269 ntBASIC9.99□□□□□ -0.81
MSH5O43196 IGKV1-22-201ENST00000524313 326 ntBASIC9.99□□□□□ -0.81
MSH5O43196 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
MSH5O43196 AC011595.1-201ENST00000548901 753 ntTSL 3 BASIC9.99□□□□□ -0.81
MSH5O43196 LRP1-AS-201ENST00000554476 325 ntTSL 3 BASIC9.99□□□□□ -0.81
MSH5O43196 DNM1P31-201ENST00000564149 696 ntBASIC9.99□□□□□ -0.81
MSH5O43196 AC068014.1-201ENST00000576836 413 ntTSL 3 BASIC9.99□□□□□ -0.81
MSH5O43196 U1.22-201ENST00000605806 164 ntBASIC9.99□□□□□ -0.81
MSH5O43196 XPNPEP3-206ENST00000614001 230 ntTSL 5 BASIC9.99□□□□□ -0.81
MSH5O43196 AC024581.2-201ENST00000619986 252 ntBASIC9.99□□□□□ -0.81
MSH5O43196 NOVA1-204ENST00000465357 3573 ntAPPRIS ALT1 TSL 3 BASIC9.99□□□□□ -0.81
MSH5O43196 AC087203.2-201ENST00000526502 1587 ntBASIC9.99□□□□□ -0.81
MSH5O43196 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
MSH5O43196 PHF6-202ENST00000370799 4186 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
MSH5O43196 NDC80-201ENST00000261597 2172 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
MSH5O43196 IRAK4-214ENST00000613694 4280 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
MSH5O43196 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC9.99□□□□□ -0.81
MSH5O43196 RAD18-201ENST00000264926 5886 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
MSH5O43196 DGKG-203ENST00000382164 3152 ntTSL 5 BASIC9.99□□□□□ -0.81
MSH5O43196 RSAD2-201ENST00000382040 3519 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
MSH5O43196 GLRA3-201ENST00000274093 8770 ntAPPRIS P3 TSL 1 (best) BASIC9.99□□□□□ -0.81
MSH5O43196 AC114401.1-201ENST00000484222 2084 ntTSL 2 BASIC9.98□□□□□ -0.81
MSH5O43196 CCDC150-201ENST00000389175 3685 ntAPPRIS P2 TSL 5 BASIC9.98□□□□□ -0.81
MSH5O43196 LARP1B-203ENST00000432347 2707 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
MSH5O43196 GCNT2-202ENST00000316170 4381 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
MSH5O43196 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC9.98□□□□□ -0.81
MSH5O43196 AC093671.1-201ENST00000624981 2929 ntBASIC9.98□□□□□ -0.81
MSH5O43196 OR2V2-203ENST00000641791 4428 ntAPPRIS P1 BASIC9.98□□□□□ -0.81
MSH5O43196 CC2D2A-204ENST00000503292 5175 ntAPPRIS P3 TSL 1 (best) BASIC9.98□□□□□ -0.81
MSH5O43196 EPHA3-203ENST00000494014 3085 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
MSH5O43196 PAK5-201ENST00000353224 4500 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
MSH5O43196 SH3D19-203ENST00000409598 5284 ntAPPRIS ALT1 TSL 1 (best) BASIC9.98□□□□□ -0.81
MSH5O43196 RNU6-428P-201ENST00000362942 107 ntBASIC9.98□□□□□ -0.81
MSH5O43196 Y_RNA.93-201ENST00000363066 109 ntBASIC9.98□□□□□ -0.81
MSH5O43196 RN7SKP208-201ENST00000365474 361 ntBASIC9.98□□□□□ -0.81
MSH5O43196 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC9.98□□□□□ -0.81
MSH5O43196 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC9.98□□□□□ -0.81
MSH5O43196 AC023141.10-201ENST00000415634 200 ntBASIC9.98□□□□□ -0.81
MSH5O43196 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC9.98□□□□□ -0.81
MSH5O43196 MTND6P5-201ENST00000448266 512 ntBASIC9.98□□□□□ -0.81
MSH5O43196 HMGB3P8-201ENST00000449709 577 ntBASIC9.98□□□□□ -0.81
MSH5O43196 AC144530.1-201ENST00000452862 555 ntBASIC9.98□□□□□ -0.81
MSH5O43196 RNU7-171P-201ENST00000459581 62 ntBASIC9.98□□□□□ -0.81
MSH5O43196 AC026254.2-201ENST00000475295 371 ntBASIC9.98□□□□□ -0.81
MSH5O43196 AC016559.1-201ENST00000511420 199 ntBASIC9.98□□□□□ -0.81
MSH5O43196 AC136628.3-201ENST00000521868 290 ntBASIC9.98□□□□□ -0.81
MSH5O43196 AC141557.1-201ENST00000540982 400 ntBASIC9.98□□□□□ -0.81
MSH5O43196 IDH3A-223ENST00000561366 389 ntTSL 3 BASIC9.98□□□□□ -0.81
MSH5O43196 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC9.98□□□□□ -0.81
MSH5O43196 MIR378D2-201ENST00000580636 98 ntBASIC9.98□□□□□ -0.81
MSH5O43196 MIR6780B-201ENST00000610307 79 ntBASIC9.98□□□□□ -0.81
MSH5O43196 AL391903.2-201ENST00000614532 247 ntBASIC9.98□□□□□ -0.81
MSH5O43196 Metazoa_SRP.167-201ENST00000614947 260 ntBASIC9.98□□□□□ -0.81
MSH5O43196 SLFN12L-201ENST00000260908 3119 ntAPPRIS P2 TSL 5 BASIC9.98□□□□□ -0.81
MSH5O43196 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
MSH5O43196 MCCC1-210ENST00000492597 2774 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
MSH5O43196 PSMD5-AS1-213ENST00000640327 3531 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
MSH5O43196 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC9.98□□□□□ -0.81
MSH5O43196 KIF18A-201ENST00000263181 3568 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
MSH5O43196 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC9.98□□□□□ -0.81
MSH5O43196 ZNF667-208ENST00000629654 3265 ntTSL 5 BASIC9.98□□□□□ -0.81
MSH5O43196 OR2F1-203ENST00000641412 4829 ntAPPRIS P1 BASIC9.98□□□□□ -0.81
MSH5O43196 CTNND1-220ENST00000529526 6099 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
MSH5O43196 SUPT6H-201ENST00000314616 6523 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
MSH5O43196 ARHGEF3-214ENST00000497267 2197 ntTSL 2 BASIC9.98□□□□□ -0.81
MSH5O43196 AC022325.1-201ENST00000502748 2199 ntBASIC9.98□□□□□ -0.81
MSH5O43196 CLCN3-209ENST00000513761 6692 ntAPPRIS ALT1 TSL 1 (best) BASIC9.98□□□□□ -0.81
MSH5O43196 NSD2-208ENST00000420906 5109 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
MSH5O43196 IL2RA-203ENST00000379959 3176 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
MSH5O43196 CACNA2D3-212ENST00000620722 3296 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
MSH5O43196 CACNB4-269ENST00000638005 4615 ntTSL 2 BASIC9.97□□□□□ -0.81
MSH5O43196 DMTF1-213ENST00000432937 2411 ntTSL 2 BASIC9.97□□□□□ -0.81
MSH5O43196 NR3C1-205ENST00000415690 3789 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
MSH5O43196 OR5M2P-202ENST00000641241 4242 ntBASIC9.97□□□□□ -0.81
Retrieved 100 of 98,524 protein–RNA pairs in 371.7 ms