Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.03
COL4A3BPQ9Y5P4 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC21.52■■□□□ 1.03
COL4A3BPQ9Y5P4 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC21.51■■□□□ 1.03
COL4A3BPQ9Y5P4 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC21.51■■□□□ 1.03
COL4A3BPQ9Y5P4 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL4A3BPQ9Y5P4 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC21.51■■□□□ 1.03
COL4A3BPQ9Y5P4 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
COL4A3BPQ9Y5P4 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL4A3BPQ9Y5P4 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC21.51■■□□□ 1.03
COL4A3BPQ9Y5P4 AC087499.1-201ENST00000418141 1075 ntBASIC21.51■■□□□ 1.03
COL4A3BPQ9Y5P4 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC21.51■■□□□ 1.03
COL4A3BPQ9Y5P4 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC21.51■■□□□ 1.03
COL4A3BPQ9Y5P4 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
COL4A3BPQ9Y5P4 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL4A3BPQ9Y5P4 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL4A3BPQ9Y5P4 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
COL4A3BPQ9Y5P4 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL4A3BPQ9Y5P4 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
COL4A3BPQ9Y5P4 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC21.51■■□□□ 1.03
COL4A3BPQ9Y5P4 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
COL4A3BPQ9Y5P4 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC21.5■■□□□ 1.03
COL4A3BPQ9Y5P4 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
COL4A3BPQ9Y5P4 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A3BPQ9Y5P4 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC21.5■■□□□ 1.03
COL4A3BPQ9Y5P4 Z82202.1-201ENST00000623446 1880 ntBASIC21.5■■□□□ 1.03
COL4A3BPQ9Y5P4 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A3BPQ9Y5P4 UNC93B2-201ENST00000285383 730 ntBASIC21.5■■□□□ 1.03
COL4A3BPQ9Y5P4 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A3BPQ9Y5P4 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A3BPQ9Y5P4 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A3BPQ9Y5P4 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A3BPQ9Y5P4 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC21.5■■□□□ 1.03
COL4A3BPQ9Y5P4 AC131212.4-201ENST00000623606 975 ntBASIC21.5■■□□□ 1.03
COL4A3BPQ9Y5P4 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC21.5■■□□□ 1.03
COL4A3BPQ9Y5P4 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
COL4A3BPQ9Y5P4 AC079598.2-202ENST00000546624 1451 ntBASIC21.5■■□□□ 1.03
COL4A3BPQ9Y5P4 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A3BPQ9Y5P4 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A3BPQ9Y5P4 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A3BPQ9Y5P4 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC21.5■■□□□ 1.03
COL4A3BPQ9Y5P4 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A3BPQ9Y5P4 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
COL4A3BPQ9Y5P4 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL4A3BPQ9Y5P4 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
COL4A3BPQ9Y5P4 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL4A3BPQ9Y5P4 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL4A3BPQ9Y5P4 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL4A3BPQ9Y5P4 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL4A3BPQ9Y5P4 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL4A3BPQ9Y5P4 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL4A3BPQ9Y5P4 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
COL4A3BPQ9Y5P4 ECEL1P3-201ENST00000427961 737 ntBASIC21.49■■□□□ 1.03
COL4A3BPQ9Y5P4 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL4A3BPQ9Y5P4 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC21.49■■□□□ 1.03
COL4A3BPQ9Y5P4 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
COL4A3BPQ9Y5P4 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC21.49■■□□□ 1.03
COL4A3BPQ9Y5P4 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC21.49■■□□□ 1.03
COL4A3BPQ9Y5P4 AP000525.1-201ENST00000608286 694 ntBASIC21.49■■□□□ 1.03
COL4A3BPQ9Y5P4 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL4A3BPQ9Y5P4 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL4A3BPQ9Y5P4 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL4A3BPQ9Y5P4 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL4A3BPQ9Y5P4 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC21.49■■□□□ 1.03
COL4A3BPQ9Y5P4 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL4A3BPQ9Y5P4 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL4A3BPQ9Y5P4 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC21.48■■□□□ 1.03
COL4A3BPQ9Y5P4 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A3BPQ9Y5P4 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A3BPQ9Y5P4 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
COL4A3BPQ9Y5P4 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A3BPQ9Y5P4 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC21.48■■□□□ 1.03
COL4A3BPQ9Y5P4 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A3BPQ9Y5P4 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A3BPQ9Y5P4 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A3BPQ9Y5P4 MESTP1-201ENST00000404287 994 ntBASIC21.48■■□□□ 1.03
COL4A3BPQ9Y5P4 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A3BPQ9Y5P4 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC21.48■■□□□ 1.03
COL4A3BPQ9Y5P4 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A3BPQ9Y5P4 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC21.48■■□□□ 1.03
COL4A3BPQ9Y5P4 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC21.48■■□□□ 1.03
COL4A3BPQ9Y5P4 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A3BPQ9Y5P4 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC21.48■■□□□ 1.03
COL4A3BPQ9Y5P4 MIR6786-201ENST00000616843 113 ntBASIC21.48■■□□□ 1.03
COL4A3BPQ9Y5P4 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
COL4A3BPQ9Y5P4 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A3BPQ9Y5P4 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A3BPQ9Y5P4 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A3BPQ9Y5P4 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A3BPQ9Y5P4 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A3BPQ9Y5P4 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A3BPQ9Y5P4 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A3BPQ9Y5P4 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC21.48■■□□□ 1.03
COL4A3BPQ9Y5P4 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A3BPQ9Y5P4 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL4A3BPQ9Y5P4 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL4A3BPQ9Y5P4 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
COL4A3BPQ9Y5P4 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC21.47■■□□□ 1.03
COL4A3BPQ9Y5P4 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL4A3BPQ9Y5P4 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL4A3BPQ9Y5P4 FSCN1P1-201ENST00000568912 1481 ntBASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms