Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC19.86■□□□□ 0.77
PCDH9Q9HC56 ITM2C-210ENST00000620962 501 ntBASIC19.86■□□□□ 0.77
PCDH9Q9HC56 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PCDH9Q9HC56 SDHAP1-207ENST00000440850 2000 ntBASIC19.86■□□□□ 0.77
PCDH9Q9HC56 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
PCDH9Q9HC56 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PCDH9Q9HC56 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PCDH9Q9HC56 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
PCDH9Q9HC56 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PCDH9Q9HC56 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.86■□□□□ 0.77
PCDH9Q9HC56 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
PCDH9Q9HC56 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.85■□□□□ 0.77
PCDH9Q9HC56 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
PCDH9Q9HC56 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
PCDH9Q9HC56 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.85■□□□□ 0.77
PCDH9Q9HC56 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PCDH9Q9HC56 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
PCDH9Q9HC56 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
PCDH9Q9HC56 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
PCDH9Q9HC56 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PCDH9Q9HC56 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PCDH9Q9HC56 ABHD17AP1-201ENST00000358206 933 ntBASIC19.85■□□□□ 0.77
PCDH9Q9HC56 KRT18P29-201ENST00000397031 1267 ntBASIC19.85■□□□□ 0.77
PCDH9Q9HC56 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.85■□□□□ 0.77
PCDH9Q9HC56 IRX5-204ENST00000560154 879 ntTSL 5 BASIC19.85■□□□□ 0.77
PCDH9Q9HC56 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
PCDH9Q9HC56 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PCDH9Q9HC56 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PCDH9Q9HC56 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PCDH9Q9HC56 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC19.85■□□□□ 0.77
PCDH9Q9HC56 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PCDH9Q9HC56 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.85■□□□□ 0.77
PCDH9Q9HC56 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.85■□□□□ 0.77
PCDH9Q9HC56 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
PCDH9Q9HC56 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PCDH9Q9HC56 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.84■□□□□ 0.77
PCDH9Q9HC56 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.84■□□□□ 0.77
PCDH9Q9HC56 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
PCDH9Q9HC56 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
PCDH9Q9HC56 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
PCDH9Q9HC56 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
PCDH9Q9HC56 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.84■□□□□ 0.77
PCDH9Q9HC56 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
PCDH9Q9HC56 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PCDH9Q9HC56 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC19.84■□□□□ 0.77
PCDH9Q9HC56 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC19.84■□□□□ 0.77
PCDH9Q9HC56 RN7SL471P-201ENST00000580476 299 ntBASIC19.84■□□□□ 0.77
PCDH9Q9HC56 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PCDH9Q9HC56 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PCDH9Q9HC56 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.84■□□□□ 0.77
PCDH9Q9HC56 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PCDH9Q9HC56 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PCDH9Q9HC56 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PCDH9Q9HC56 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
PCDH9Q9HC56 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PCDH9Q9HC56 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.84■□□□□ 0.77
PCDH9Q9HC56 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC19.83■□□□□ 0.77
PCDH9Q9HC56 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
PCDH9Q9HC56 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PCDH9Q9HC56 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
PCDH9Q9HC56 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
PCDH9Q9HC56 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
PCDH9Q9HC56 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PCDH9Q9HC56 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
PCDH9Q9HC56 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PCDH9Q9HC56 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC19.83■□□□□ 0.77
PCDH9Q9HC56 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
PCDH9Q9HC56 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC19.83■□□□□ 0.77
PCDH9Q9HC56 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.83■□□□□ 0.77
PCDH9Q9HC56 MMD2-204ENST00000612910 778 ntTSL 5 BASIC19.83■□□□□ 0.77
PCDH9Q9HC56 Six3os1_6.1-201ENST00000620790 196 ntBASIC19.83■□□□□ 0.77
PCDH9Q9HC56 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
PCDH9Q9HC56 AL023875.1-201ENST00000640777 796 ntBASIC19.83■□□□□ 0.77
PCDH9Q9HC56 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PCDH9Q9HC56 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
PCDH9Q9HC56 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PCDH9Q9HC56 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PCDH9Q9HC56 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
PCDH9Q9HC56 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
PCDH9Q9HC56 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.83■□□□□ 0.76
PCDH9Q9HC56 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PCDH9Q9HC56 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
PCDH9Q9HC56 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.83■□□□□ 0.76
PCDH9Q9HC56 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
PCDH9Q9HC56 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.83■□□□□ 0.76
PCDH9Q9HC56 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
PCDH9Q9HC56 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.83■□□□□ 0.76
PCDH9Q9HC56 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PCDH9Q9HC56 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCDH9Q9HC56 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCDH9Q9HC56 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PCDH9Q9HC56 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.82■□□□□ 0.76
PCDH9Q9HC56 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PCDH9Q9HC56 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.82■□□□□ 0.76
PCDH9Q9HC56 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
PCDH9Q9HC56 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCDH9Q9HC56 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCDH9Q9HC56 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.82■□□□□ 0.76
PCDH9Q9HC56 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCDH9Q9HC56 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms