Protein–RNA interactions for Protein: Q9BYV6

TRIM55, Tripartite motif-containing protein 55, humanhuman

Predictions only

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55Q9BYV6 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 KRT17P1-201ENST00000399211 1546 ntBASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 CDV3P1-201ENST00000471403 739 ntBASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 UNC93B5-201ENST00000530315 699 ntBASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 AP006294.2-201ENST00000641667 209 ntBASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM55Q9BYV6 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM55Q9BYV6 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.37■□□□□ 0.69
TRIM55Q9BYV6 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM55Q9BYV6 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM55Q9BYV6 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.37■□□□□ 0.69
TRIM55Q9BYV6 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM55Q9BYV6 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM55Q9BYV6 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM55Q9BYV6 KRT8P17-201ENST00000453110 1448 ntBASIC19.37■□□□□ 0.69
TRIM55Q9BYV6 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.37■□□□□ 0.69
TRIM55Q9BYV6 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
TRIM55Q9BYV6 AC104581.1-202ENST00000635932 2618 ntBASIC19.37■□□□□ 0.69
TRIM55Q9BYV6 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM55Q9BYV6 MMD2-204ENST00000612910 778 ntTSL 5 BASIC19.37■□□□□ 0.69
TRIM55Q9BYV6 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM55Q9BYV6 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM55Q9BYV6 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM55Q9BYV6 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM55Q9BYV6 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
TRIM55Q9BYV6 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM55Q9BYV6 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM55Q9BYV6 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
TRIM55Q9BYV6 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM55Q9BYV6 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
TRIM55Q9BYV6 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM55Q9BYV6 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19.36■□□□□ 0.69
TRIM55Q9BYV6 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
TRIM55Q9BYV6 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM55Q9BYV6 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.36■□□□□ 0.69
TRIM55Q9BYV6 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.36■□□□□ 0.69
TRIM55Q9BYV6 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM55Q9BYV6 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC19.36■□□□□ 0.69
TRIM55Q9BYV6 AC026366.1-201ENST00000488803 879 ntBASIC19.36■□□□□ 0.69
TRIM55Q9BYV6 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.36■□□□□ 0.69
TRIM55Q9BYV6 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC19.36■□□□□ 0.69
TRIM55Q9BYV6 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC19.36■□□□□ 0.69
TRIM55Q9BYV6 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.36■□□□□ 0.69
TRIM55Q9BYV6 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC19.36■□□□□ 0.69
TRIM55Q9BYV6 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM55Q9BYV6 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM55Q9BYV6 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM55Q9BYV6 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM55Q9BYV6 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
TRIM55Q9BYV6 PTBP1P-201ENST00000554374 1601 ntBASIC19.36■□□□□ 0.69
TRIM55Q9BYV6 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.36■□□□□ 0.69
TRIM55Q9BYV6 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
TRIM55Q9BYV6 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.35■□□□□ 0.69
TRIM55Q9BYV6 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM55Q9BYV6 AC009113.1-201ENST00000570267 2443 ntBASIC19.35■□□□□ 0.69
TRIM55Q9BYV6 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM55Q9BYV6 AC087633.2-202ENST00000565166 1439 ntBASIC19.35■□□□□ 0.69
TRIM55Q9BYV6 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
TRIM55Q9BYV6 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM55Q9BYV6 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
TRIM55Q9BYV6 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM55Q9BYV6 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM55Q9BYV6 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM55Q9BYV6 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.35■□□□□ 0.69
TRIM55Q9BYV6 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM55Q9BYV6 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC19.35■□□□□ 0.69
TRIM55Q9BYV6 GATS-209ENST00000454084 1030 ntTSL 3 BASIC19.35■□□□□ 0.69
TRIM55Q9BYV6 AP003097.1-201ENST00000530657 1135 ntBASIC19.35■□□□□ 0.69
TRIM55Q9BYV6 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC19.35■□□□□ 0.69
TRIM55Q9BYV6 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC19.35■□□□□ 0.69
TRIM55Q9BYV6 AC073648.6-201ENST00000641589 218 ntBASIC19.35■□□□□ 0.69
TRIM55Q9BYV6 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms