Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 KRT18P35-201ENST00000510488 1269 ntBASIC21.06■□□□□ 0.96
TRAIPQ9BWF2 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC21.06■□□□□ 0.96
TRAIPQ9BWF2 AC010653.2-201ENST00000623505 997 ntBASIC21.06■□□□□ 0.96
TRAIPQ9BWF2 AC116562.4-202ENST00000641738 218 ntBASIC21.06■□□□□ 0.96
TRAIPQ9BWF2 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC21.06■□□□□ 0.96
TRAIPQ9BWF2 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC21.06■□□□□ 0.96
TRAIPQ9BWF2 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC21.06■□□□□ 0.96
TRAIPQ9BWF2 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC21.06■□□□□ 0.96
TRAIPQ9BWF2 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAIPQ9BWF2 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAIPQ9BWF2 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAIPQ9BWF2 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAIPQ9BWF2 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAIPQ9BWF2 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC21.05■□□□□ 0.96
TRAIPQ9BWF2 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC21.05■□□□□ 0.96
TRAIPQ9BWF2 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRAIPQ9BWF2 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRAIPQ9BWF2 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
TRAIPQ9BWF2 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC21.05■□□□□ 0.96
TRAIPQ9BWF2 INGX-201ENST00000359239 846 ntBASIC21.05■□□□□ 0.96
TRAIPQ9BWF2 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC21.05■□□□□ 0.96
TRAIPQ9BWF2 CCR12P-201ENST00000446203 998 ntBASIC21.05■□□□□ 0.96
TRAIPQ9BWF2 CA15P1-201ENST00000481698 905 ntBASIC21.05■□□□□ 0.96
TRAIPQ9BWF2 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC21.05■□□□□ 0.96
TRAIPQ9BWF2 AL023803.3-201ENST00000615559 522 ntBASIC21.05■□□□□ 0.96
TRAIPQ9BWF2 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRAIPQ9BWF2 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRAIPQ9BWF2 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRAIPQ9BWF2 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRAIPQ9BWF2 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
TRAIPQ9BWF2 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 KRT8P41-201ENST00000533985 1514 ntBASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 HMGA1P5-201ENST00000412453 271 ntBASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 AC104076.2-201ENST00000448912 469 ntBASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 AC092338.2-201ENST00000568827 1415 ntBASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC21.04■□□□□ 0.96
TRAIPQ9BWF2 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAIPQ9BWF2 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAIPQ9BWF2 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
TRAIPQ9BWF2 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAIPQ9BWF2 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC21.03■□□□□ 0.96
TRAIPQ9BWF2 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC21.03■□□□□ 0.96
TRAIPQ9BWF2 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC21.03■□□□□ 0.96
TRAIPQ9BWF2 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAIPQ9BWF2 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC21.03■□□□□ 0.96
TRAIPQ9BWF2 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
TRAIPQ9BWF2 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAIPQ9BWF2 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAIPQ9BWF2 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC21.03■□□□□ 0.96
TRAIPQ9BWF2 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRAIPQ9BWF2 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
TRAIPQ9BWF2 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC21.03■□□□□ 0.96
TRAIPQ9BWF2 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.03■□□□□ 0.96
TRAIPQ9BWF2 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC21.03■□□□□ 0.96
TRAIPQ9BWF2 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAIPQ9BWF2 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRAIPQ9BWF2 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAIPQ9BWF2 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC21.03■□□□□ 0.96
TRAIPQ9BWF2 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRAIPQ9BWF2 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAIPQ9BWF2 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC21.03■□□□□ 0.96
TRAIPQ9BWF2 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
TRAIPQ9BWF2 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAIPQ9BWF2 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAIPQ9BWF2 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC21.02■□□□□ 0.96
TRAIPQ9BWF2 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAIPQ9BWF2 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAIPQ9BWF2 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAIPQ9BWF2 LIN28AP1-201ENST00000429574 405 ntBASIC21.02■□□□□ 0.96
TRAIPQ9BWF2 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC21.02■□□□□ 0.96
TRAIPQ9BWF2 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC21.02■□□□□ 0.96
TRAIPQ9BWF2 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAIPQ9BWF2 DUX4L26-201ENST00000489078 1255 ntBASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms