Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.83■□□□□ 0.29
COL12A1Q99715 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
COL12A1Q99715 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.29
COL12A1Q99715 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC16.83■□□□□ 0.29
COL12A1Q99715 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.29
COL12A1Q99715 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC16.83■□□□□ 0.28
COL12A1Q99715 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
COL12A1Q99715 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL12A1Q99715 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL12A1Q99715 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL12A1Q99715 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL12A1Q99715 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC16.83■□□□□ 0.28
COL12A1Q99715 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL12A1Q99715 WWC2-AS2-201ENST00000578387 2183 ntBASIC16.83■□□□□ 0.28
COL12A1Q99715 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL12A1Q99715 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL12A1Q99715 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC16.83■□□□□ 0.28
COL12A1Q99715 KRT18P67-201ENST00000432816 1264 ntBASIC16.83■□□□□ 0.28
COL12A1Q99715 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL12A1Q99715 AC073648.2-201ENST00000510116 352 ntBASIC16.83■□□□□ 0.28
COL12A1Q99715 KRT8P26-201ENST00000534154 1276 ntBASIC16.83■□□□□ 0.28
COL12A1Q99715 AP005901.3-202ENST00000581653 237 ntBASIC16.83■□□□□ 0.28
COL12A1Q99715 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC16.83■□□□□ 0.28
COL12A1Q99715 WDR6-223ENST00000627177 207 ntTSL 2 BASIC16.83■□□□□ 0.28
COL12A1Q99715 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.82■□□□□ 0.28
COL12A1Q99715 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL12A1Q99715 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
COL12A1Q99715 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL12A1Q99715 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL12A1Q99715 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
COL12A1Q99715 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.82■□□□□ 0.28
COL12A1Q99715 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC16.82■□□□□ 0.28
COL12A1Q99715 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL12A1Q99715 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL12A1Q99715 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
COL12A1Q99715 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL12A1Q99715 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL12A1Q99715 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL12A1Q99715 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.82■□□□□ 0.28
COL12A1Q99715 AC244107.1-201ENST00000442033 332 ntBASIC16.82■□□□□ 0.28
COL12A1Q99715 NMU-202ENST00000505262 693 ntTSL 3 BASIC16.82■□□□□ 0.28
COL12A1Q99715 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL12A1Q99715 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL12A1Q99715 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL12A1Q99715 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL12A1Q99715 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL12A1Q99715 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL12A1Q99715 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
COL12A1Q99715 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
COL12A1Q99715 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.81■□□□□ 0.28
COL12A1Q99715 AC112497.1-201ENST00000624824 639 ntBASIC16.81■□□□□ 0.28
COL12A1Q99715 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL12A1Q99715 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL12A1Q99715 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC16.81■□□□□ 0.28
COL12A1Q99715 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL12A1Q99715 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC16.81■□□□□ 0.28
COL12A1Q99715 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC16.81■□□□□ 0.28
COL12A1Q99715 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL12A1Q99715 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.81■□□□□ 0.28
COL12A1Q99715 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.81■□□□□ 0.28
COL12A1Q99715 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC16.81■□□□□ 0.28
COL12A1Q99715 PLK5-205ENST00000642079 1969 ntBASIC16.81■□□□□ 0.28
COL12A1Q99715 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL12A1Q99715 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL12A1Q99715 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC16.81■□□□□ 0.28
COL12A1Q99715 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL12A1Q99715 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL12A1Q99715 RPSAP43-201ENST00000402237 625 ntBASIC16.81■□□□□ 0.28
COL12A1Q99715 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.81■□□□□ 0.28
COL12A1Q99715 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC16.81■□□□□ 0.28
COL12A1Q99715 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL12A1Q99715 AF238378.1-201ENST00000526806 358 ntBASIC16.81■□□□□ 0.28
COL12A1Q99715 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC16.81■□□□□ 0.28
COL12A1Q99715 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC16.81■□□□□ 0.28
COL12A1Q99715 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.81■□□□□ 0.28
COL12A1Q99715 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL12A1Q99715 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
COL12A1Q99715 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.8■□□□□ 0.28
COL12A1Q99715 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL12A1Q99715 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL12A1Q99715 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL12A1Q99715 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL12A1Q99715 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.8■□□□□ 0.28
COL12A1Q99715 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC16.8■□□□□ 0.28
COL12A1Q99715 AL390719.2-201ENST00000606993 987 ntBASIC16.8■□□□□ 0.28
COL12A1Q99715 AC148477.8-201ENST00000624298 468 ntBASIC16.8■□□□□ 0.28
COL12A1Q99715 AC134684.3-201ENST00000641758 218 ntBASIC16.8■□□□□ 0.28
COL12A1Q99715 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL12A1Q99715 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL12A1Q99715 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL12A1Q99715 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.8■□□□□ 0.28
COL12A1Q99715 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL12A1Q99715 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.8■□□□□ 0.28
COL12A1Q99715 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL12A1Q99715 FBXW4P1-201ENST00000426721 2239 ntBASIC16.8■□□□□ 0.28
COL12A1Q99715 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC16.8■□□□□ 0.28
COL12A1Q99715 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL12A1Q99715 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL12A1Q99715 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL12A1Q99715 AKR1C7P-201ENST00000305623 895 ntBASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms