Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 AC087289.5-201ENST00000586076 3175 ntBASIC14.88□□□□□ -0.03
CCDC140Q96MF4 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 AP000974.1-201ENST00000623909 2387 ntBASIC14.88□□□□□ -0.03
CCDC140Q96MF4 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 AC004980.1-204ENST00000429707 299 ntBASIC14.88□□□□□ -0.03
CCDC140Q96MF4 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC14.88□□□□□ -0.03
CCDC140Q96MF4 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 KRT8P41-201ENST00000533985 1514 ntBASIC14.87□□□□□ -0.03
CCDC140Q96MF4 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 KRT16P1-201ENST00000399124 1418 ntBASIC14.87□□□□□ -0.03
CCDC140Q96MF4 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 UBE2SP1-201ENST00000450587 669 ntBASIC14.87□□□□□ -0.03
CCDC140Q96MF4 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 RPS15-203ENST00000586096 570 ntTSL 2 BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC140Q96MF4 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
CCDC140Q96MF4 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC140Q96MF4 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC14.86□□□□□ -0.03
CCDC140Q96MF4 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC140Q96MF4 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC140Q96MF4 AL049812.1-201ENST00000432563 2267 ntBASIC14.86□□□□□ -0.03
CCDC140Q96MF4 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC140Q96MF4 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC140Q96MF4 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC140Q96MF4 BX323043.1-201ENST00000641006 1765 ntBASIC14.86□□□□□ -0.03
CCDC140Q96MF4 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
CCDC140Q96MF4 AC098818.2-201ENST00000564925 2320 ntBASIC14.86□□□□□ -0.03
CCDC140Q96MF4 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC140Q96MF4 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC140Q96MF4 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC140Q96MF4 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC140Q96MF4 PTPA-216ENST00000432651 857 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC140Q96MF4 PPP1R14BP5-201ENST00000440334 435 ntBASIC14.86□□□□□ -0.03
CCDC140Q96MF4 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC140Q96MF4 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms