Protein–RNA interactions for Protein: Q96JI7

SPG11, Spatacsin, humanhuman

Predictions only

Length 2,443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11Q96JI7 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SPG11Q96JI7 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SPG11Q96JI7 CHCHD2P8-201ENST00000429873 447 ntBASIC16.3■□□□□ 0.2
SPG11Q96JI7 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC16.3■□□□□ 0.2
SPG11Q96JI7 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.3■□□□□ 0.2
SPG11Q96JI7 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC16.3■□□□□ 0.2
SPG11Q96JI7 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SPG11Q96JI7 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SPG11Q96JI7 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SPG11Q96JI7 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC16.3■□□□□ 0.2
SPG11Q96JI7 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SPG11Q96JI7 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SPG11Q96JI7 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SPG11Q96JI7 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SPG11Q96JI7 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
SPG11Q96JI7 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC16.29■□□□□ 0.2
SPG11Q96JI7 KRT18P31-201ENST00000506277 1292 ntBASIC16.29■□□□□ 0.2
SPG11Q96JI7 AC012615.1-201ENST00000565797 1299 ntBASIC16.29■□□□□ 0.2
SPG11Q96JI7 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
SPG11Q96JI7 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SPG11Q96JI7 AC036111.1-201ENST00000533973 1582 ntBASIC16.29■□□□□ 0.2
SPG11Q96JI7 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SPG11Q96JI7 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SPG11Q96JI7 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SPG11Q96JI7 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
SPG11Q96JI7 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SPG11Q96JI7 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SPG11Q96JI7 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC16.29■□□□□ 0.2
SPG11Q96JI7 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SPG11Q96JI7 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SPG11Q96JI7 BID-203ENST00000399765 1879 ntTSL 2 BASIC16.29■□□□□ 0.2
SPG11Q96JI7 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SPG11Q96JI7 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SPG11Q96JI7 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC16.29■□□□□ 0.2
SPG11Q96JI7 AL162741.1-201ENST00000565563 1558 ntBASIC16.29■□□□□ 0.2
SPG11Q96JI7 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC16.29■□□□□ 0.2
SPG11Q96JI7 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SPG11Q96JI7 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.29■□□□□ 0.2
SPG11Q96JI7 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC16.29■□□□□ 0.2
SPG11Q96JI7 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.29■□□□□ 0.2
SPG11Q96JI7 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.29■□□□□ 0.2
SPG11Q96JI7 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SPG11Q96JI7 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SPG11Q96JI7 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SPG11Q96JI7 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SPG11Q96JI7 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SPG11Q96JI7 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
SPG11Q96JI7 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.28■□□□□ 0.2
SPG11Q96JI7 PHB2-202ENST00000440277 996 ntTSL 5 BASIC16.28■□□□□ 0.2
SPG11Q96JI7 AC034232.1-201ENST00000506026 1064 ntBASIC16.28■□□□□ 0.2
SPG11Q96JI7 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC16.28■□□□□ 0.2
SPG11Q96JI7 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC16.28■□□□□ 0.2
SPG11Q96JI7 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SPG11Q96JI7 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SPG11Q96JI7 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SPG11Q96JI7 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SPG11Q96JI7 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC16.28■□□□□ 0.2
SPG11Q96JI7 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SPG11Q96JI7 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC16.28■□□□□ 0.2
SPG11Q96JI7 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SPG11Q96JI7 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SPG11Q96JI7 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SPG11Q96JI7 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SPG11Q96JI7 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SPG11Q96JI7 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
SPG11Q96JI7 TSPY19P-201ENST00000418461 509 ntBASIC16.28■□□□□ 0.2
SPG11Q96JI7 TSPY18P-201ENST00000441642 509 ntBASIC16.28■□□□□ 0.2
SPG11Q96JI7 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.28■□□□□ 0.2
SPG11Q96JI7 RASA4DP-201ENST00000460726 1199 ntBASIC16.28■□□□□ 0.2
SPG11Q96JI7 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SPG11Q96JI7 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.28■□□□□ 0.2
SPG11Q96JI7 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC16.28■□□□□ 0.2
SPG11Q96JI7 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SPG11Q96JI7 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC16.28■□□□□ 0.2
SPG11Q96JI7 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC16.28■□□□□ 0.2
SPG11Q96JI7 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SPG11Q96JI7 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.28■□□□□ 0.2
SPG11Q96JI7 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SPG11Q96JI7 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SPG11Q96JI7 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC16.27■□□□□ 0.2
SPG11Q96JI7 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SPG11Q96JI7 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
SPG11Q96JI7 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
SPG11Q96JI7 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
SPG11Q96JI7 AL662844.1-201ENST00000546340 181 ntBASIC16.27■□□□□ 0.2
SPG11Q96JI7 AC117500.6-201ENST00000624871 588 ntBASIC16.27■□□□□ 0.2
SPG11Q96JI7 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SPG11Q96JI7 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SPG11Q96JI7 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SPG11Q96JI7 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SPG11Q96JI7 BID-212ENST00000614949 1988 ntTSL 5 BASIC16.27■□□□□ 0.2
SPG11Q96JI7 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SPG11Q96JI7 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SPG11Q96JI7 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SPG11Q96JI7 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SPG11Q96JI7 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SPG11Q96JI7 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SPG11Q96JI7 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.27■□□□□ 0.19
SPG11Q96JI7 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.19
SPG11Q96JI7 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC16.27■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms