Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
CHFRQ96EP1 GABARAPL3-202ENST00000624044 1851 ntBASIC19.58■□□□□ 0.72
CHFRQ96EP1 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CHFRQ96EP1 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CHFRQ96EP1 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
CHFRQ96EP1 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHFRQ96EP1 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CHFRQ96EP1 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CHFRQ96EP1 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.57■□□□□ 0.72
CHFRQ96EP1 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHFRQ96EP1 AC104417.2-201ENST00000562989 1793 ntBASIC19.57■□□□□ 0.72
CHFRQ96EP1 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHFRQ96EP1 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CHFRQ96EP1 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CHFRQ96EP1 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHFRQ96EP1 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHFRQ96EP1 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.57■□□□□ 0.72
CHFRQ96EP1 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHFRQ96EP1 GCSHP2-201ENST00000560971 527 ntBASIC19.57■□□□□ 0.72
CHFRQ96EP1 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.57■□□□□ 0.72
CHFRQ96EP1 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CHFRQ96EP1 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
CHFRQ96EP1 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHFRQ96EP1 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHFRQ96EP1 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC19.57■□□□□ 0.72
CHFRQ96EP1 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHFRQ96EP1 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CHFRQ96EP1 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHFRQ96EP1 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHFRQ96EP1 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHFRQ96EP1 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
CHFRQ96EP1 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
CHFRQ96EP1 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CHFRQ96EP1 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHFRQ96EP1 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHFRQ96EP1 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CHFRQ96EP1 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CHFRQ96EP1 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CHFRQ96EP1 PHB2-202ENST00000440277 996 ntTSL 5 BASIC19.56■□□□□ 0.72
CHFRQ96EP1 DUSP5P1-201ENST00000441325 1139 ntBASIC19.56■□□□□ 0.72
CHFRQ96EP1 SPDYE13P-201ENST00000445314 798 ntBASIC19.56■□□□□ 0.72
CHFRQ96EP1 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.56■□□□□ 0.72
CHFRQ96EP1 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHFRQ96EP1 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC19.56■□□□□ 0.72
CHFRQ96EP1 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
CHFRQ96EP1 AC093458.2-201ENST00000623150 629 ntBASIC19.56■□□□□ 0.72
CHFRQ96EP1 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC19.56■□□□□ 0.72
CHFRQ96EP1 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CHFRQ96EP1 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.56■□□□□ 0.72
CHFRQ96EP1 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CHFRQ96EP1 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHFRQ96EP1 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.55■□□□□ 0.72
CHFRQ96EP1 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CHFRQ96EP1 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
CHFRQ96EP1 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CHFRQ96EP1 SPDYE15P-201ENST00000424157 909 ntBASIC19.55■□□□□ 0.72
CHFRQ96EP1 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CHFRQ96EP1 AC112907.2-201ENST00000448639 330 ntBASIC19.55■□□□□ 0.72
CHFRQ96EP1 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CHFRQ96EP1 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC19.55■□□□□ 0.72
CHFRQ96EP1 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC19.55■□□□□ 0.72
CHFRQ96EP1 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.55■□□□□ 0.72
CHFRQ96EP1 KRT126P-201ENST00000549467 1181 ntBASIC19.55■□□□□ 0.72
CHFRQ96EP1 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CHFRQ96EP1 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC19.55■□□□□ 0.72
CHFRQ96EP1 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC19.55■□□□□ 0.72
CHFRQ96EP1 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CHFRQ96EP1 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHFRQ96EP1 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHFRQ96EP1 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
CHFRQ96EP1 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CHFRQ96EP1 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CHFRQ96EP1 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHFRQ96EP1 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC19.54■□□□□ 0.72
CHFRQ96EP1 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CHFRQ96EP1 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CHFRQ96EP1 DAP-202ENST00000432074 1048 ntTSL 2 BASIC19.54■□□□□ 0.72
CHFRQ96EP1 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC19.54■□□□□ 0.72
CHFRQ96EP1 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CHFRQ96EP1 AL136038.3-201ENST00000561909 1096 ntBASIC19.54■□□□□ 0.72
CHFRQ96EP1 NEK4P2-201ENST00000580004 1012 ntBASIC19.54■□□□□ 0.72
CHFRQ96EP1 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.54■□□□□ 0.72
CHFRQ96EP1 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC19.54■□□□□ 0.72
CHFRQ96EP1 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC19.54■□□□□ 0.72
CHFRQ96EP1 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CHFRQ96EP1 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
CHFRQ96EP1 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHFRQ96EP1 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.54■□□□□ 0.72
CHFRQ96EP1 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHFRQ96EP1 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.54■□□□□ 0.72
CHFRQ96EP1 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHFRQ96EP1 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
CHFRQ96EP1 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHFRQ96EP1 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.54■□□□□ 0.72
CHFRQ96EP1 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.54■□□□□ 0.72
CHFRQ96EP1 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHFRQ96EP1 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHFRQ96EP1 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC19.53■□□□□ 0.72
CHFRQ96EP1 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.53■□□□□ 0.72
CHFRQ96EP1 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms