Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TTC28Q96AY4 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TTC28Q96AY4 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TTC28Q96AY4 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TTC28Q96AY4 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TTC28Q96AY4 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TTC28Q96AY4 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TTC28Q96AY4 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TTC28Q96AY4 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19.59■□□□□ 0.73
TTC28Q96AY4 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
TTC28Q96AY4 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TTC28Q96AY4 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TTC28Q96AY4 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TTC28Q96AY4 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TTC28Q96AY4 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TTC28Q96AY4 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TTC28Q96AY4 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
TTC28Q96AY4 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
TTC28Q96AY4 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TTC28Q96AY4 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
TTC28Q96AY4 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TTC28Q96AY4 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
TTC28Q96AY4 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
TTC28Q96AY4 PON3-203ENST00000427422 894 ntTSL 3 BASIC19.58■□□□□ 0.73
TTC28Q96AY4 KRT18P3-201ENST00000451602 1288 ntBASIC19.58■□□□□ 0.73
TTC28Q96AY4 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC19.58■□□□□ 0.73
TTC28Q96AY4 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC19.58■□□□□ 0.73
TTC28Q96AY4 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
TTC28Q96AY4 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.58■□□□□ 0.73
TTC28Q96AY4 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
TTC28Q96AY4 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
TTC28Q96AY4 AL391807.1-203ENST00000604392 2365 ntBASIC19.58■□□□□ 0.72
TTC28Q96AY4 COA5-202ENST00000409997 557 ntTSL 4 BASIC19.58■□□□□ 0.72
TTC28Q96AY4 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC19.58■□□□□ 0.72
TTC28Q96AY4 AC024243.1-201ENST00000609234 778 ntBASIC19.58■□□□□ 0.72
TTC28Q96AY4 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC19.58■□□□□ 0.72
TTC28Q96AY4 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
TTC28Q96AY4 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC19.57■□□□□ 0.72
TTC28Q96AY4 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TTC28Q96AY4 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.57■□□□□ 0.72
TTC28Q96AY4 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC19.57■□□□□ 0.72
TTC28Q96AY4 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC19.57■□□□□ 0.72
TTC28Q96AY4 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.57■□□□□ 0.72
TTC28Q96AY4 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC19.57■□□□□ 0.72
TTC28Q96AY4 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
TTC28Q96AY4 AC112482.1-201ENST00000492080 688 ntBASIC19.57■□□□□ 0.72
TTC28Q96AY4 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC19.57■□□□□ 0.72
TTC28Q96AY4 MIR1199-201ENST00000621445 119 ntBASIC19.57■□□□□ 0.72
TTC28Q96AY4 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
TTC28Q96AY4 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TTC28Q96AY4 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.57■□□□□ 0.72
TTC28Q96AY4 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.57■□□□□ 0.72
TTC28Q96AY4 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TTC28Q96AY4 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC19.57■□□□□ 0.72
TTC28Q96AY4 MIR770-201ENST00000390219 98 ntBASIC19.57■□□□□ 0.72
TTC28Q96AY4 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TTC28Q96AY4 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC19.57■□□□□ 0.72
TTC28Q96AY4 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC19.57■□□□□ 0.72
TTC28Q96AY4 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.56■□□□□ 0.72
TTC28Q96AY4 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TTC28Q96AY4 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.56■□□□□ 0.72
TTC28Q96AY4 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TTC28Q96AY4 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TTC28Q96AY4 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TTC28Q96AY4 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.56■□□□□ 0.72
TTC28Q96AY4 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC19.56■□□□□ 0.72
TTC28Q96AY4 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TTC28Q96AY4 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC19.56■□□□□ 0.72
TTC28Q96AY4 AL121603.2-201ENST00000557373 2117 ntBASIC19.56■□□□□ 0.72
TTC28Q96AY4 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TTC28Q96AY4 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
TTC28Q96AY4 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC19.56■□□□□ 0.72
TTC28Q96AY4 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC19.56■□□□□ 0.72
TTC28Q96AY4 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC19.56■□□□□ 0.72
TTC28Q96AY4 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TTC28Q96AY4 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TTC28Q96AY4 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TTC28Q96AY4 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC19.56■□□□□ 0.72
TTC28Q96AY4 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC19.56■□□□□ 0.72
TTC28Q96AY4 GREM1-201ENST00000560677 623 ntTSL 4 BASIC19.56■□□□□ 0.72
TTC28Q96AY4 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
TTC28Q96AY4 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TTC28Q96AY4 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TTC28Q96AY4 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.55■□□□□ 0.72
TTC28Q96AY4 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
TTC28Q96AY4 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TTC28Q96AY4 AC116407.3-201ENST00000623905 1129 ntBASIC19.55■□□□□ 0.72
TTC28Q96AY4 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
TTC28Q96AY4 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.55■□□□□ 0.72
TTC28Q96AY4 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
TTC28Q96AY4 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
TTC28Q96AY4 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TTC28Q96AY4 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.55■□□□□ 0.72
TTC28Q96AY4 AC242852.2-201ENST00000615738 1807 ntBASIC19.55■□□□□ 0.72
TTC28Q96AY4 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.55■□□□□ 0.72
TTC28Q96AY4 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
TTC28Q96AY4 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC19.54■□□□□ 0.72
TTC28Q96AY4 WDR53-203ENST00000429115 683 ntTSL 2 BASIC19.54■□□□□ 0.72
TTC28Q96AY4 AC091607.1-201ENST00000490318 1060 ntBASIC19.54■□□□□ 0.72
TTC28Q96AY4 AC079602.3-201ENST00000623931 403 ntBASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms