Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
SH3RF1Q7Z6J0 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SH3RF1Q7Z6J0 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC22.04■■□□□ 1.12
SH3RF1Q7Z6J0 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC22.04■■□□□ 1.12
SH3RF1Q7Z6J0 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
SH3RF1Q7Z6J0 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC22.04■■□□□ 1.12
SH3RF1Q7Z6J0 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC22.04■■□□□ 1.12
SH3RF1Q7Z6J0 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC22.04■■□□□ 1.12
SH3RF1Q7Z6J0 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC22.04■■□□□ 1.12
SH3RF1Q7Z6J0 TFP1-202ENST00000475455 1573 ntBASIC22.04■■□□□ 1.12
SH3RF1Q7Z6J0 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SH3RF1Q7Z6J0 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SH3RF1Q7Z6J0 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
SH3RF1Q7Z6J0 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SH3RF1Q7Z6J0 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC22.03■■□□□ 1.12
SH3RF1Q7Z6J0 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
SH3RF1Q7Z6J0 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SH3RF1Q7Z6J0 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SH3RF1Q7Z6J0 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
SH3RF1Q7Z6J0 ISCU-203ENST00000431221 799 ntTSL 2 BASIC22.03■■□□□ 1.12
SH3RF1Q7Z6J0 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
SH3RF1Q7Z6J0 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SH3RF1Q7Z6J0 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC22.03■■□□□ 1.12
SH3RF1Q7Z6J0 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SH3RF1Q7Z6J0 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC22.03■■□□□ 1.12
SH3RF1Q7Z6J0 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SH3RF1Q7Z6J0 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SH3RF1Q7Z6J0 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SH3RF1Q7Z6J0 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
SH3RF1Q7Z6J0 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SH3RF1Q7Z6J0 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC22.02■■□□□ 1.12
SH3RF1Q7Z6J0 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC22.02■■□□□ 1.12
SH3RF1Q7Z6J0 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC22.02■■□□□ 1.12
SH3RF1Q7Z6J0 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SH3RF1Q7Z6J0 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
SH3RF1Q7Z6J0 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SH3RF1Q7Z6J0 INGX-201ENST00000359239 846 ntBASIC22.02■■□□□ 1.12
SH3RF1Q7Z6J0 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
SH3RF1Q7Z6J0 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC22.02■■□□□ 1.12
SH3RF1Q7Z6J0 AK4P3-201ENST00000418260 669 ntBASIC22.02■■□□□ 1.12
SH3RF1Q7Z6J0 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC22.02■■□□□ 1.12
SH3RF1Q7Z6J0 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC22.02■■□□□ 1.12
SH3RF1Q7Z6J0 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC22.02■■□□□ 1.12
SH3RF1Q7Z6J0 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
SH3RF1Q7Z6J0 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SH3RF1Q7Z6J0 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SH3RF1Q7Z6J0 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
SH3RF1Q7Z6J0 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
SH3RF1Q7Z6J0 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 AC098818.2-201ENST00000564925 2320 ntBASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 AC022616.7-201ENST00000525383 220 ntBASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 TOLLIP-AS1-201ENST00000530897 939 ntBASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC22.01■■□□□ 1.11
SH3RF1Q7Z6J0 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 C2orf69P3-201ENST00000565542 1120 ntBASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 AC091076.1-201ENST00000610741 619 ntBASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms