Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC17.21■□□□□ 0.35
H3F3AP84243 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC17.21■□□□□ 0.35
H3F3AP84243 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
H3F3AP84243 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
H3F3AP84243 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.21■□□□□ 0.35
H3F3AP84243 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
H3F3AP84243 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.21■□□□□ 0.34
H3F3AP84243 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
H3F3AP84243 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
H3F3AP84243 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC17.2■□□□□ 0.34
H3F3AP84243 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
H3F3AP84243 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
H3F3AP84243 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
H3F3AP84243 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.2■□□□□ 0.34
H3F3AP84243 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
H3F3AP84243 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.2■□□□□ 0.34
H3F3AP84243 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
H3F3AP84243 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
H3F3AP84243 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
H3F3AP84243 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
H3F3AP84243 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
H3F3AP84243 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
H3F3AP84243 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
H3F3AP84243 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC17.2■□□□□ 0.34
H3F3AP84243 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC17.2■□□□□ 0.34
H3F3AP84243 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC17.2■□□□□ 0.34
H3F3AP84243 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.2■□□□□ 0.34
H3F3AP84243 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
H3F3AP84243 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC17.2■□□□□ 0.34
H3F3AP84243 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
H3F3AP84243 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
H3F3AP84243 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
H3F3AP84243 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
H3F3AP84243 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
H3F3AP84243 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
H3F3AP84243 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
H3F3AP84243 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
H3F3AP84243 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
H3F3AP84243 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.19■□□□□ 0.34
H3F3AP84243 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC17.19■□□□□ 0.34
H3F3AP84243 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.19■□□□□ 0.34
H3F3AP84243 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC17.19■□□□□ 0.34
H3F3AP84243 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
H3F3AP84243 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
H3F3AP84243 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
H3F3AP84243 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
H3F3AP84243 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
H3F3AP84243 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.19■□□□□ 0.34
H3F3AP84243 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
H3F3AP84243 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
H3F3AP84243 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
H3F3AP84243 AC116562.2-201ENST00000507042 360 ntBASIC17.19■□□□□ 0.34
H3F3AP84243 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC17.19■□□□□ 0.34
H3F3AP84243 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.19■□□□□ 0.34
H3F3AP84243 DET1-205ENST00000558413 583 ntTSL 4 BASIC17.19■□□□□ 0.34
H3F3AP84243 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
H3F3AP84243 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.19■□□□□ 0.34
H3F3AP84243 AC066615.1-201ENST00000640911 628 ntBASIC17.19■□□□□ 0.34
H3F3AP84243 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
H3F3AP84243 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC17.19■□□□□ 0.34
H3F3AP84243 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
H3F3AP84243 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
H3F3AP84243 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
H3F3AP84243 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.19■□□□□ 0.34
H3F3AP84243 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.19■□□□□ 0.34
H3F3AP84243 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.19■□□□□ 0.34
H3F3AP84243 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
H3F3AP84243 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
H3F3AP84243 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
H3F3AP84243 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.19■□□□□ 0.34
H3F3AP84243 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
H3F3AP84243 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
H3F3AP84243 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
H3F3AP84243 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
H3F3AP84243 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC17.18■□□□□ 0.34
H3F3AP84243 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
H3F3AP84243 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
H3F3AP84243 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.18■□□□□ 0.34
H3F3AP84243 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
H3F3AP84243 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.18■□□□□ 0.34
H3F3AP84243 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
H3F3AP84243 MESTP1-201ENST00000404287 994 ntBASIC17.18■□□□□ 0.34
H3F3AP84243 NUDT16P1-203ENST00000513809 620 ntBASIC17.18■□□□□ 0.34
H3F3AP84243 PENK-204ENST00000518770 863 ntTSL 2 BASIC17.18■□□□□ 0.34
H3F3AP84243 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC17.18■□□□□ 0.34
H3F3AP84243 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.18■□□□□ 0.34
H3F3AP84243 AC130371.2-201ENST00000619443 611 ntBASIC17.18■□□□□ 0.34
H3F3AP84243 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
H3F3AP84243 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC17.18■□□□□ 0.34
H3F3AP84243 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
H3F3AP84243 RCC2P6-201ENST00000526625 1557 ntBASIC17.18■□□□□ 0.34
H3F3AP84243 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.18■□□□□ 0.34
H3F3AP84243 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
H3F3AP84243 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
H3F3AP84243 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC17.18■□□□□ 0.34
H3F3AP84243 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
H3F3AP84243 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
H3F3AP84243 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.18■□□□□ 0.34
H3F3AP84243 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
H3F3AP84243 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms