Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RNF4P78317 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RNF4P78317 POLI-202ENST00000406285 2030 ntTSL 2 BASIC17.81■□□□□ 0.44
RNF4P78317 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
RNF4P78317 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC17.81■□□□□ 0.44
RNF4P78317 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
RNF4P78317 MMP23A-201ENST00000234610 1017 ntBASIC17.81■□□□□ 0.44
RNF4P78317 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RNF4P78317 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RNF4P78317 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RNF4P78317 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RNF4P78317 MIR1238-201ENST00000408483 83 ntBASIC17.81■□□□□ 0.44
RNF4P78317 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RNF4P78317 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RNF4P78317 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.81■□□□□ 0.44
RNF4P78317 FITM1-202ENST00000559294 800 ntBASIC17.81■□□□□ 0.44
RNF4P78317 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RNF4P78317 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RNF4P78317 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
RNF4P78317 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RNF4P78317 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC17.81■□□□□ 0.44
RNF4P78317 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.81■□□□□ 0.44
RNF4P78317 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RNF4P78317 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RNF4P78317 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
RNF4P78317 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.8■□□□□ 0.44
RNF4P78317 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
RNF4P78317 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RNF4P78317 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC17.8■□□□□ 0.44
RNF4P78317 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC17.8■□□□□ 0.44
RNF4P78317 TP73-202ENST00000354437 2140 ntTSL 5 BASIC17.8■□□□□ 0.44
RNF4P78317 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.8■□□□□ 0.44
RNF4P78317 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.8■□□□□ 0.44
RNF4P78317 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RNF4P78317 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RNF4P78317 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RNF4P78317 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RNF4P78317 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RNF4P78317 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RNF4P78317 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
RNF4P78317 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.8■□□□□ 0.44
RNF4P78317 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.8■□□□□ 0.44
RNF4P78317 SLC25A1P4-201ENST00000567977 778 ntBASIC17.8■□□□□ 0.44
RNF4P78317 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.8■□□□□ 0.44
RNF4P78317 GLDC-219ENST00000640208 420 ntTSL 2 BASIC17.8■□□□□ 0.44
RNF4P78317 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC17.8■□□□□ 0.44
RNF4P78317 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
RNF4P78317 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RNF4P78317 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC17.8■□□□□ 0.44
RNF4P78317 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC17.8■□□□□ 0.44
RNF4P78317 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RNF4P78317 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.8■□□□□ 0.44
RNF4P78317 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
RNF4P78317 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RNF4P78317 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.79■□□□□ 0.44
RNF4P78317 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RNF4P78317 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
RNF4P78317 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RNF4P78317 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RNF4P78317 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
RNF4P78317 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.79■□□□□ 0.44
RNF4P78317 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC17.79■□□□□ 0.44
RNF4P78317 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.79■□□□□ 0.44
RNF4P78317 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC17.79■□□□□ 0.44
RNF4P78317 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RNF4P78317 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RNF4P78317 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RNF4P78317 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RNF4P78317 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.79■□□□□ 0.44
RNF4P78317 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
RNF4P78317 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RNF4P78317 AL390955.1-201ENST00000428694 934 ntBASIC17.79■□□□□ 0.44
RNF4P78317 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.79■□□□□ 0.44
RNF4P78317 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RNF4P78317 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.79■□□□□ 0.44
RNF4P78317 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
RNF4P78317 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.79■□□□□ 0.44
RNF4P78317 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RNF4P78317 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.79■□□□□ 0.44
RNF4P78317 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.79■□□□□ 0.44
RNF4P78317 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC17.79■□□□□ 0.44
RNF4P78317 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
RNF4P78317 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
RNF4P78317 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
RNF4P78317 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.79■□□□□ 0.44
RNF4P78317 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
RNF4P78317 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC17.78■□□□□ 0.44
RNF4P78317 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
RNF4P78317 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.78■□□□□ 0.44
RNF4P78317 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.78■□□□□ 0.44
RNF4P78317 Z82202.1-201ENST00000623446 1880 ntBASIC17.78■□□□□ 0.44
RNF4P78317 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RNF4P78317 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.78■□□□□ 0.44
RNF4P78317 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RNF4P78317 AIRN-201ENST00000601203 4374 ntBASIC17.78■□□□□ 0.44
RNF4P78317 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
RNF4P78317 AC087499.1-201ENST00000418141 1075 ntBASIC17.78■□□□□ 0.44
RNF4P78317 CRYGFP-201ENST00000418459 633 ntBASIC17.78■□□□□ 0.44
RNF4P78317 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RNF4P78317 ARL16-209ENST00000573715 763 ntTSL 3 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms