Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LSM3P62310 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
LSM3P62310 AC009053.2-201ENST00000563701 2365 ntBASIC17.33■□□□□ 0.36
LSM3P62310 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.33■□□□□ 0.36
LSM3P62310 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LSM3P62310 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
LSM3P62310 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LSM3P62310 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
LSM3P62310 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LSM3P62310 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LSM3P62310 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
LSM3P62310 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
LSM3P62310 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LSM3P62310 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.33■□□□□ 0.36
LSM3P62310 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.33■□□□□ 0.36
LSM3P62310 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
LSM3P62310 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LSM3P62310 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LSM3P62310 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LSM3P62310 PTBP1P-201ENST00000554374 1601 ntBASIC17.32■□□□□ 0.36
LSM3P62310 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LSM3P62310 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LSM3P62310 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LSM3P62310 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
LSM3P62310 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LSM3P62310 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LSM3P62310 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LSM3P62310 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LSM3P62310 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC17.32■□□□□ 0.36
LSM3P62310 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.32■□□□□ 0.36
LSM3P62310 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
LSM3P62310 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LSM3P62310 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
LSM3P62310 AC091799.1-201ENST00000422823 811 ntBASIC17.32■□□□□ 0.36
LSM3P62310 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC17.32■□□□□ 0.36
LSM3P62310 SLC7A5P2-201ENST00000553010 536 ntBASIC17.32■□□□□ 0.36
LSM3P62310 AC138907.5-202ENST00000569484 235 ntBASIC17.32■□□□□ 0.36
LSM3P62310 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC17.32■□□□□ 0.36
LSM3P62310 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC17.32■□□□□ 0.36
LSM3P62310 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LSM3P62310 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LSM3P62310 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.32■□□□□ 0.36
LSM3P62310 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.32■□□□□ 0.36
LSM3P62310 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
LSM3P62310 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.32■□□□□ 0.36
LSM3P62310 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LSM3P62310 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LSM3P62310 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LSM3P62310 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LSM3P62310 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LSM3P62310 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LSM3P62310 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LSM3P62310 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
LSM3P62310 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.31■□□□□ 0.36
LSM3P62310 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LSM3P62310 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LSM3P62310 TSPY26P-201ENST00000476365 1326 ntBASIC17.31■□□□□ 0.36
LSM3P62310 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LSM3P62310 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
LSM3P62310 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LSM3P62310 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC17.31■□□□□ 0.36
LSM3P62310 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
LSM3P62310 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LSM3P62310 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC17.31■□□□□ 0.36
LSM3P62310 RARRES2P1-201ENST00000474487 481 ntBASIC17.31■□□□□ 0.36
LSM3P62310 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC17.31■□□□□ 0.36
LSM3P62310 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
LSM3P62310 GRAMD4P7-201ENST00000578182 1232 ntBASIC17.31■□□□□ 0.36
LSM3P62310 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LSM3P62310 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LSM3P62310 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LSM3P62310 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LSM3P62310 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LSM3P62310 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LSM3P62310 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LSM3P62310 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LSM3P62310 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LSM3P62310 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LSM3P62310 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.31■□□□□ 0.36
LSM3P62310 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
LSM3P62310 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LSM3P62310 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.31■□□□□ 0.36
LSM3P62310 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LSM3P62310 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.31■□□□□ 0.36
LSM3P62310 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
LSM3P62310 PRORSD1P-202ENST00000563365 2154 ntBASIC17.3■□□□□ 0.36
LSM3P62310 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
LSM3P62310 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LSM3P62310 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
LSM3P62310 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LSM3P62310 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LSM3P62310 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LSM3P62310 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LSM3P62310 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC17.3■□□□□ 0.36
LSM3P62310 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LSM3P62310 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC17.3■□□□□ 0.36
LSM3P62310 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LSM3P62310 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC17.3■□□□□ 0.36
LSM3P62310 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
LSM3P62310 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms