Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH13P55290 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH13P55290 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH13P55290 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CDH13P55290 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH13P55290 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CDH13P55290 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH13P55290 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDH13P55290 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.79■□□□□ 0.6
CDH13P55290 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH13P55290 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.79■□□□□ 0.6
CDH13P55290 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CDH13P55290 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH13P55290 FP475955.4-201ENST00000623131 1990 ntBASIC18.79■□□□□ 0.6
CDH13P55290 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH13P55290 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH13P55290 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.79■□□□□ 0.6
CDH13P55290 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH13P55290 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH13P55290 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.79■□□□□ 0.6
CDH13P55290 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC18.79■□□□□ 0.6
CDH13P55290 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.79■□□□□ 0.6
CDH13P55290 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDH13P55290 AC008687.6-201ENST00000596318 630 ntBASIC18.79■□□□□ 0.6
CDH13P55290 AC092666.2-201ENST00000613287 246 ntBASIC18.79■□□□□ 0.6
CDH13P55290 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.79■□□□□ 0.6
CDH13P55290 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CDH13P55290 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CDH13P55290 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.79■□□□□ 0.6
CDH13P55290 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH13P55290 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.79■□□□□ 0.6
CDH13P55290 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.79■□□□□ 0.6
CDH13P55290 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDH13P55290 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH13P55290 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH13P55290 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH13P55290 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.79■□□□□ 0.6
CDH13P55290 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CDH13P55290 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
CDH13P55290 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CDH13P55290 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH13P55290 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CDH13P55290 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.78■□□□□ 0.6
CDH13P55290 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
CDH13P55290 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH13P55290 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH13P55290 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.78■□□□□ 0.6
CDH13P55290 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.78■□□□□ 0.6
CDH13P55290 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC18.78■□□□□ 0.6
CDH13P55290 KRT18P16-201ENST00000510337 1294 ntBASIC18.78■□□□□ 0.6
CDH13P55290 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.78■□□□□ 0.6
CDH13P55290 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC18.78■□□□□ 0.6
CDH13P55290 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.78■□□□□ 0.6
CDH13P55290 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CDH13P55290 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.78■□□□□ 0.6
CDH13P55290 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.78■□□□□ 0.6
CDH13P55290 AL121829.2-201ENST00000620908 328 ntBASIC18.78■□□□□ 0.6
CDH13P55290 AC133041.1-202ENST00000642053 222 ntBASIC18.78■□□□□ 0.6
CDH13P55290 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.78■□□□□ 0.6
CDH13P55290 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH13P55290 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH13P55290 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.78■□□□□ 0.6
CDH13P55290 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.78■□□□□ 0.6
CDH13P55290 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH13P55290 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH13P55290 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CDH13P55290 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH13P55290 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH13P55290 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.78■□□□□ 0.6
CDH13P55290 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.78■□□□□ 0.6
CDH13P55290 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.78■□□□□ 0.6
CDH13P55290 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
CDH13P55290 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH13P55290 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
CDH13P55290 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH13P55290 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CDH13P55290 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH13P55290 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CDH13P55290 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH13P55290 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH13P55290 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.77■□□□□ 0.6
CDH13P55290 AC104581.1-202ENST00000635932 2618 ntBASIC18.77■□□□□ 0.6
CDH13P55290 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH13P55290 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH13P55290 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.77■□□□□ 0.6
CDH13P55290 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.77■□□□□ 0.6
CDH13P55290 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.77■□□□□ 0.6
CDH13P55290 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH13P55290 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.77■□□□□ 0.6
CDH13P55290 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CDH13P55290 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.77■□□□□ 0.6
CDH13P55290 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.77■□□□□ 0.6
CDH13P55290 AC069152.1-201ENST00000438030 544 ntBASIC18.77■□□□□ 0.6
CDH13P55290 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.77■□□□□ 0.6
CDH13P55290 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.77■□□□□ 0.6
CDH13P55290 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.77■□□□□ 0.6
CDH13P55290 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.77■□□□□ 0.6
CDH13P55290 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.77■□□□□ 0.6
CDH13P55290 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.77■□□□□ 0.6
CDH13P55290 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms