Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSX1P28360 AL158211.5-201ENST00000623583 2518 ntBASIC17.62■□□□□ 0.41
MSX1P28360 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSX1P28360 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
MSX1P28360 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSX1P28360 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSX1P28360 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSX1P28360 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSX1P28360 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.62■□□□□ 0.41
MSX1P28360 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC17.62■□□□□ 0.41
MSX1P28360 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.62■□□□□ 0.41
MSX1P28360 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
MSX1P28360 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC17.62■□□□□ 0.41
MSX1P28360 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSX1P28360 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.62■□□□□ 0.41
MSX1P28360 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC17.62■□□□□ 0.41
MSX1P28360 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC17.62■□□□□ 0.41
MSX1P28360 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
MSX1P28360 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSX1P28360 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
MSX1P28360 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
MSX1P28360 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
MSX1P28360 AC104417.2-201ENST00000562989 1793 ntBASIC17.61■□□□□ 0.41
MSX1P28360 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
MSX1P28360 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC17.61■□□□□ 0.41
MSX1P28360 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
MSX1P28360 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSX1P28360 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSX1P28360 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSX1P28360 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
MSX1P28360 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
MSX1P28360 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSX1P28360 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
MSX1P28360 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.61■□□□□ 0.41
MSX1P28360 DECR2-212ENST00000627716 352 ntTSL 2 BASIC17.61■□□□□ 0.41
MSX1P28360 KRT16P1-201ENST00000399124 1418 ntBASIC17.61■□□□□ 0.41
MSX1P28360 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSX1P28360 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSX1P28360 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.61■□□□□ 0.41
MSX1P28360 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSX1P28360 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC17.61■□□□□ 0.41
MSX1P28360 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC17.61■□□□□ 0.41
MSX1P28360 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
MSX1P28360 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.61■□□□□ 0.41
MSX1P28360 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSX1P28360 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.61■□□□□ 0.41
MSX1P28360 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSX1P28360 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSX1P28360 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSX1P28360 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSX1P28360 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSX1P28360 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.6■□□□□ 0.41
MSX1P28360 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
MSX1P28360 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSX1P28360 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC17.6■□□□□ 0.41
MSX1P28360 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
MSX1P28360 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSX1P28360 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSX1P28360 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
MSX1P28360 PPP1R14BP5-201ENST00000440334 435 ntBASIC17.6■□□□□ 0.41
MSX1P28360 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.6■□□□□ 0.41
MSX1P28360 GLRB-205ENST00000512619 728 ntTSL 3 BASIC17.6■□□□□ 0.41
MSX1P28360 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.6■□□□□ 0.41
MSX1P28360 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
MSX1P28360 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC17.6■□□□□ 0.41
MSX1P28360 RN7SL850P-201ENST00000579959 291 ntBASIC17.6■□□□□ 0.41
MSX1P28360 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.6■□□□□ 0.41
MSX1P28360 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSX1P28360 AL445228.2-201ENST00000605589 952 ntBASIC17.6■□□□□ 0.41
MSX1P28360 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC17.6■□□□□ 0.41
MSX1P28360 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC17.6■□□□□ 0.41
MSX1P28360 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
MSX1P28360 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
MSX1P28360 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.6■□□□□ 0.41
MSX1P28360 AL031985.4-201ENST00000642138 673 ntBASIC17.6■□□□□ 0.41
MSX1P28360 SRI-203ENST00000419179 1307 ntTSL 2 BASIC17.6■□□□□ 0.41
MSX1P28360 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
MSX1P28360 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
MSX1P28360 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
MSX1P28360 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.6■□□□□ 0.41
MSX1P28360 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSX1P28360 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSX1P28360 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
MSX1P28360 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
MSX1P28360 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSX1P28360 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MSX1P28360 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSX1P28360 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSX1P28360 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC17.59■□□□□ 0.41
MSX1P28360 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.59■□□□□ 0.41
MSX1P28360 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSX1P28360 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
MSX1P28360 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSX1P28360 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.59■□□□□ 0.41
MSX1P28360 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSX1P28360 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MSX1P28360 FAM197Y1-201ENST00000421178 764 ntBASIC17.59■□□□□ 0.41
MSX1P28360 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC17.59■□□□□ 0.41
MSX1P28360 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC17.59■□□□□ 0.41
MSX1P28360 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms