Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MSH3P20585 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
MSH3P20585 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MSH3P20585 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MSH3P20585 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.14■□□□□ 0.65
MSH3P20585 AC005332.7-201ENST00000614046 2005 ntBASIC19.13■□□□□ 0.65
MSH3P20585 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
MSH3P20585 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.13■□□□□ 0.65
MSH3P20585 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
MSH3P20585 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.13■□□□□ 0.65
MSH3P20585 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
MSH3P20585 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MSH3P20585 AC093827.2-201ENST00000512654 315 ntBASIC19.13■□□□□ 0.65
MSH3P20585 CD177P1-201ENST00000606252 935 ntBASIC19.13■□□□□ 0.65
MSH3P20585 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
MSH3P20585 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.13■□□□□ 0.65
MSH3P20585 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
MSH3P20585 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
MSH3P20585 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
MSH3P20585 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
MSH3P20585 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.13■□□□□ 0.65
MSH3P20585 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MSH3P20585 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.13■□□□□ 0.65
MSH3P20585 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
MSH3P20585 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.13■□□□□ 0.65
MSH3P20585 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
MSH3P20585 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
MSH3P20585 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
MSH3P20585 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MSH3P20585 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.12■□□□□ 0.65
MSH3P20585 LINC01465-201ENST00000408887 1940 ntBASIC19.12■□□□□ 0.65
MSH3P20585 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MSH3P20585 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
MSH3P20585 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
MSH3P20585 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
MSH3P20585 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
MSH3P20585 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
MSH3P20585 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MSH3P20585 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MSH3P20585 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
MSH3P20585 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MSH3P20585 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
MSH3P20585 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MSH3P20585 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC19.12■□□□□ 0.65
MSH3P20585 AC113410.3-201ENST00000623366 203 ntBASIC19.12■□□□□ 0.65
MSH3P20585 AC087289.5-201ENST00000586076 3175 ntBASIC19.12■□□□□ 0.65
MSH3P20585 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MSH3P20585 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
MSH3P20585 AC093484.2-201ENST00000580996 2166 ntBASIC19.12■□□□□ 0.65
MSH3P20585 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
MSH3P20585 AC018445.3-201ENST00000624177 1945 ntBASIC19.12■□□□□ 0.65
MSH3P20585 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSH3P20585 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
MSH3P20585 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSH3P20585 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.11■□□□□ 0.65
MSH3P20585 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
MSH3P20585 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.11■□□□□ 0.65
MSH3P20585 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSH3P20585 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.11■□□□□ 0.65
MSH3P20585 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
MSH3P20585 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSH3P20585 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSH3P20585 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSH3P20585 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
MSH3P20585 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
MSH3P20585 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.11■□□□□ 0.65
MSH3P20585 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC19.11■□□□□ 0.65
MSH3P20585 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
MSH3P20585 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.11■□□□□ 0.65
MSH3P20585 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.11■□□□□ 0.65
MSH3P20585 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.11■□□□□ 0.65
MSH3P20585 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSH3P20585 AL031985.4-201ENST00000642138 673 ntBASIC19.11■□□□□ 0.65
MSH3P20585 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSH3P20585 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSH3P20585 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
MSH3P20585 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSH3P20585 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
MSH3P20585 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSH3P20585 AC104417.2-201ENST00000562989 1793 ntBASIC19.11■□□□□ 0.65
MSH3P20585 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
MSH3P20585 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.1■□□□□ 0.65
MSH3P20585 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.1■□□□□ 0.65
MSH3P20585 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSH3P20585 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSH3P20585 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSH3P20585 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSH3P20585 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.1■□□□□ 0.65
MSH3P20585 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
MSH3P20585 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSH3P20585 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSH3P20585 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSH3P20585 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSH3P20585 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
MSH3P20585 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
MSH3P20585 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.1■□□□□ 0.65
MSH3P20585 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSH3P20585 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
MSH3P20585 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.1■□□□□ 0.65
MSH3P20585 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms