Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.59■□□□□ 0.73
HOXC11O43248 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HOXC11O43248 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC19.59■□□□□ 0.73
HOXC11O43248 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC19.59■□□□□ 0.73
HOXC11O43248 AC011558.1-201ENST00000623459 338 ntBASIC19.59■□□□□ 0.73
HOXC11O43248 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
HOXC11O43248 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXC11O43248 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXC11O43248 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXC11O43248 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
HOXC11O43248 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.59■□□□□ 0.73
HOXC11O43248 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.59■□□□□ 0.73
HOXC11O43248 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.59■□□□□ 0.73
HOXC11O43248 KRT8P45-201ENST00000414328 1447 ntBASIC19.59■□□□□ 0.73
HOXC11O43248 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXC11O43248 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
HOXC11O43248 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
HOXC11O43248 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HOXC11O43248 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HOXC11O43248 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HOXC11O43248 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HOXC11O43248 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HOXC11O43248 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC19.58■□□□□ 0.72
HOXC11O43248 TSPY21P-201ENST00000433481 731 ntBASIC19.58■□□□□ 0.72
HOXC11O43248 TSPY23P-201ENST00000440136 739 ntBASIC19.58■□□□□ 0.72
HOXC11O43248 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC19.58■□□□□ 0.72
HOXC11O43248 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.58■□□□□ 0.72
HOXC11O43248 CBFB-203ENST00000561924 584 ntTSL 5 BASIC19.58■□□□□ 0.72
HOXC11O43248 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC19.58■□□□□ 0.72
HOXC11O43248 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC19.58■□□□□ 0.72
HOXC11O43248 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HOXC11O43248 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.58■□□□□ 0.72
HOXC11O43248 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
HOXC11O43248 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.72
HOXC11O43248 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.58■□□□□ 0.72
HOXC11O43248 AL157384.1-201ENST00000445995 2473 ntBASIC19.58■□□□□ 0.72
HOXC11O43248 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HOXC11O43248 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HOXC11O43248 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HOXC11O43248 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
HOXC11O43248 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC19.57■□□□□ 0.72
HOXC11O43248 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
HOXC11O43248 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.57■□□□□ 0.72
HOXC11O43248 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HOXC11O43248 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HOXC11O43248 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HOXC11O43248 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HOXC11O43248 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
HOXC11O43248 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HOXC11O43248 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC19.57■□□□□ 0.72
HOXC11O43248 AC092647.4-201ENST00000457211 535 ntBASIC19.57■□□□□ 0.72
HOXC11O43248 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.57■□□□□ 0.72
HOXC11O43248 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC19.57■□□□□ 0.72
HOXC11O43248 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.57■□□□□ 0.72
HOXC11O43248 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HOXC11O43248 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
HOXC11O43248 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
HOXC11O43248 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC19.57■□□□□ 0.72
HOXC11O43248 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HOXC11O43248 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
HOXC11O43248 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HOXC11O43248 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
HOXC11O43248 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
HOXC11O43248 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HOXC11O43248 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.57■□□□□ 0.72
HOXC11O43248 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC11O43248 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.56■□□□□ 0.72
HOXC11O43248 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC11O43248 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.56■□□□□ 0.72
HOXC11O43248 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.56■□□□□ 0.72
HOXC11O43248 PKD1P6-201ENST00000343738 4769 ntBASIC19.56■□□□□ 0.72
HOXC11O43248 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC19.56■□□□□ 0.72
HOXC11O43248 MED25-212ENST00000618715 1467 ntTSL 5 BASIC19.56■□□□□ 0.72
HOXC11O43248 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC11O43248 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.56■□□□□ 0.72
HOXC11O43248 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC11O43248 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC11O43248 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC19.56■□□□□ 0.72
HOXC11O43248 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC11O43248 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC11O43248 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC11O43248 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC11O43248 HOMER2P1-201ENST00000455653 964 ntBASIC19.56■□□□□ 0.72
HOXC11O43248 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC19.56■□□□□ 0.72
HOXC11O43248 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC19.56■□□□□ 0.72
HOXC11O43248 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC11O43248 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC19.56■□□□□ 0.72
HOXC11O43248 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC11O43248 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.56■□□□□ 0.72
HOXC11O43248 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC11O43248 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.56■□□□□ 0.72
HOXC11O43248 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC11O43248 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
HOXC11O43248 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC11O43248 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC11O43248 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.56■□□□□ 0.72
HOXC11O43248 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC11O43248 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC11O43248 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC11O43248 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms