Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC25.99■■□□□ 1.75
MSH5O43196 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
MSH5O43196 MIR1238-201ENST00000408483 83 ntBASIC25.99■■□□□ 1.75
MSH5O43196 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC25.99■■□□□ 1.75
MSH5O43196 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC25.99■■□□□ 1.75
MSH5O43196 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC25.99■■□□□ 1.75
MSH5O43196 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC25.99■■□□□ 1.75
MSH5O43196 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC25.99■■□□□ 1.75
MSH5O43196 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC25.99■■□□□ 1.75
MSH5O43196 NTF6B-201ENST00000591913 560 ntBASIC25.99■■□□□ 1.75
MSH5O43196 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC25.99■■□□□ 1.75
MSH5O43196 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
MSH5O43196 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC25.99■■□□□ 1.75
MSH5O43196 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC25.99■■□□□ 1.75
MSH5O43196 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC25.99■■□□□ 1.75
MSH5O43196 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
MSH5O43196 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC25.99■■□□□ 1.75
MSH5O43196 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
MSH5O43196 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC25.98■■□□□ 1.75
MSH5O43196 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
MSH5O43196 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC25.98■■□□□ 1.75
MSH5O43196 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC25.98■■□□□ 1.75
MSH5O43196 AC022395.1-201ENST00000451610 895 ntTSL 2 BASIC25.98■■□□□ 1.75
MSH5O43196 RBM17P1-201ENST00000453646 1190 ntBASIC25.98■■□□□ 1.75
MSH5O43196 LINC02057-201ENST00000503882 640 ntTSL 2 BASIC25.98■■□□□ 1.75
MSH5O43196 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC25.98■■□□□ 1.75
MSH5O43196 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC25.98■■□□□ 1.75
MSH5O43196 RFC1-217ENST00000639695 867 ntTSL 5 BASIC25.98■■□□□ 1.75
MSH5O43196 AC025287.4-201ENST00000640173 1240 ntAPPRIS P1 TSL 5 BASIC25.98■■□□□ 1.75
MSH5O43196 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
MSH5O43196 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
MSH5O43196 USP39-204ENST00000409766 2033 ntTSL 2 BASIC25.98■■□□□ 1.75
MSH5O43196 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC25.98■■□□□ 1.75
MSH5O43196 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
MSH5O43196 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
MSH5O43196 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
MSH5O43196 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC25.97■■□□□ 1.75
MSH5O43196 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC25.97■■□□□ 1.75
MSH5O43196 AC027702.1-201ENST00000563810 1770 ntBASIC25.97■■□□□ 1.75
MSH5O43196 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC25.97■■□□□ 1.75
MSH5O43196 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC25.97■■□□□ 1.75
MSH5O43196 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
MSH5O43196 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
MSH5O43196 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
MSH5O43196 AC113347.1-201ENST00000413321 391 ntBASIC25.97■■□□□ 1.75
MSH5O43196 AL136981.1-204ENST00000425090 461 ntTSL 3 BASIC25.97■■□□□ 1.75
MSH5O43196 AL137013.1-201ENST00000432946 1228 ntBASIC25.97■■□□□ 1.75
MSH5O43196 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
MSH5O43196 AC087388.1-201ENST00000571370 1112 ntBASIC25.97■■□□□ 1.75
MSH5O43196 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC25.97■■□□□ 1.75
MSH5O43196 AC079598.2-202ENST00000546624 1451 ntBASIC25.97■■□□□ 1.75
MSH5O43196 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
MSH5O43196 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC25.97■■□□□ 1.75
MSH5O43196 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
MSH5O43196 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
MSH5O43196 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC25.96■■□□□ 1.75
MSH5O43196 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
MSH5O43196 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC25.96■■□□□ 1.75
MSH5O43196 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC25.96■■□□□ 1.75
MSH5O43196 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
MSH5O43196 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC25.96■■□□□ 1.75
MSH5O43196 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC25.96■■□□□ 1.75
MSH5O43196 UNC93B2-201ENST00000285383 730 ntBASIC25.96■■□□□ 1.75
MSH5O43196 LINC01393-202ENST00000435981 1187 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
MSH5O43196 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC25.96■■□□□ 1.75
MSH5O43196 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC25.96■■□□□ 1.75
MSH5O43196 AC105233.3-201ENST00000531125 744 ntBASIC25.96■■□□□ 1.75
MSH5O43196 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
MSH5O43196 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
MSH5O43196 AC005332.8-201ENST00000622750 2735 ntBASIC25.96■■□□□ 1.75
MSH5O43196 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC25.96■■□□□ 1.75
MSH5O43196 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC25.96■■□□□ 1.75
MSH5O43196 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
MSH5O43196 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC25.96■■□□□ 1.75
MSH5O43196 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC25.96■■□□□ 1.75
MSH5O43196 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
MSH5O43196 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
MSH5O43196 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
MSH5O43196 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
MSH5O43196 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC25.95■■□□□ 1.75
MSH5O43196 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
MSH5O43196 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
MSH5O43196 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
MSH5O43196 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC25.95■■□□□ 1.75
MSH5O43196 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC25.95■■□□□ 1.74
MSH5O43196 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC25.95■■□□□ 1.74
MSH5O43196 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
MSH5O43196 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC25.95■■□□□ 1.74
MSH5O43196 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
MSH5O43196 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC25.95■■□□□ 1.74
MSH5O43196 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC25.95■■□□□ 1.74
MSH5O43196 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
MSH5O43196 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC25.95■■□□□ 1.74
MSH5O43196 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC25.95■■□□□ 1.74
MSH5O43196 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC25.95■■□□□ 1.74
MSH5O43196 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC25.95■■□□□ 1.74
MSH5O43196 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
MSH5O43196 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC25.95■■□□□ 1.74
MSH5O43196 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC25.95■■□□□ 1.74
MSH5O43196 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms