Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
UBFD1O14562 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.68■□□□□ 0.58
UBFD1O14562 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.68■□□□□ 0.58
UBFD1O14562 GXYLT1P5-201ENST00000614548 1189 ntBASIC18.68■□□□□ 0.58
UBFD1O14562 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
UBFD1O14562 WIZP1-201ENST00000531444 2299 ntBASIC18.68■□□□□ 0.58
UBFD1O14562 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
UBFD1O14562 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
UBFD1O14562 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
UBFD1O14562 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.68■□□□□ 0.58
UBFD1O14562 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
UBFD1O14562 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
UBFD1O14562 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
UBFD1O14562 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
UBFD1O14562 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
UBFD1O14562 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
UBFD1O14562 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.67■□□□□ 0.58
UBFD1O14562 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.67■□□□□ 0.58
UBFD1O14562 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
UBFD1O14562 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.67■□□□□ 0.58
UBFD1O14562 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
UBFD1O14562 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
UBFD1O14562 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
UBFD1O14562 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
UBFD1O14562 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.67■□□□□ 0.58
UBFD1O14562 AC090192.1-201ENST00000517740 490 ntBASIC18.67■□□□□ 0.58
UBFD1O14562 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
UBFD1O14562 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
UBFD1O14562 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
UBFD1O14562 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
UBFD1O14562 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
UBFD1O14562 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.67■□□□□ 0.58
UBFD1O14562 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
UBFD1O14562 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
UBFD1O14562 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
UBFD1O14562 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
UBFD1O14562 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.66■□□□□ 0.58
UBFD1O14562 FEM1AP3-201ENST00000403722 1741 ntBASIC18.66■□□□□ 0.58
UBFD1O14562 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
UBFD1O14562 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.66■□□□□ 0.58
UBFD1O14562 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
UBFD1O14562 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
UBFD1O14562 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
UBFD1O14562 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
UBFD1O14562 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
UBFD1O14562 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
UBFD1O14562 TUBB8P6-201ENST00000436895 1288 ntBASIC18.66■□□□□ 0.58
UBFD1O14562 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.66■□□□□ 0.58
UBFD1O14562 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.66■□□□□ 0.58
UBFD1O14562 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
UBFD1O14562 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.66■□□□□ 0.58
UBFD1O14562 AC008687.6-201ENST00000596318 630 ntBASIC18.66■□□□□ 0.58
UBFD1O14562 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
UBFD1O14562 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.66■□□□□ 0.58
UBFD1O14562 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
UBFD1O14562 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
UBFD1O14562 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
UBFD1O14562 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.66■□□□□ 0.58
UBFD1O14562 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
UBFD1O14562 Z98044.1-201ENST00000632503 1764 ntBASIC18.65■□□□□ 0.58
UBFD1O14562 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
UBFD1O14562 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
UBFD1O14562 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.65■□□□□ 0.58
UBFD1O14562 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
UBFD1O14562 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
UBFD1O14562 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
UBFD1O14562 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.65■□□□□ 0.58
UBFD1O14562 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
UBFD1O14562 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
UBFD1O14562 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.65■□□□□ 0.58
UBFD1O14562 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
UBFD1O14562 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
UBFD1O14562 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
UBFD1O14562 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.65■□□□□ 0.58
UBFD1O14562 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.65■□□□□ 0.58
UBFD1O14562 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
UBFD1O14562 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.65■□□□□ 0.58
UBFD1O14562 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.65■□□□□ 0.58
UBFD1O14562 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
UBFD1O14562 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
UBFD1O14562 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
UBFD1O14562 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
UBFD1O14562 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.65■□□□□ 0.58
UBFD1O14562 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
UBFD1O14562 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
UBFD1O14562 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
UBFD1O14562 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.65■□□□□ 0.58
UBFD1O14562 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
UBFD1O14562 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
UBFD1O14562 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
UBFD1O14562 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
UBFD1O14562 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.64■□□□□ 0.58
UBFD1O14562 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.58
UBFD1O14562 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
UBFD1O14562 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
UBFD1O14562 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
UBFD1O14562 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
UBFD1O14562 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
UBFD1O14562 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
UBFD1O14562 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms