Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LRRC53A6NM62 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
LRRC53A6NM62 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LRRC53A6NM62 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
LRRC53A6NM62 USP49-202ENST00000373010 2446 ntTSL 5 BASIC20.74■□□□□ 0.91
LRRC53A6NM62 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
LRRC53A6NM62 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LRRC53A6NM62 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LRRC53A6NM62 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LRRC53A6NM62 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LRRC53A6NM62 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LRRC53A6NM62 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
LRRC53A6NM62 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.73■□□□□ 0.91
LRRC53A6NM62 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
LRRC53A6NM62 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LRRC53A6NM62 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.73■□□□□ 0.91
LRRC53A6NM62 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.73■□□□□ 0.91
LRRC53A6NM62 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.73■□□□□ 0.91
LRRC53A6NM62 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.73■□□□□ 0.91
LRRC53A6NM62 AL109923.1-201ENST00000618799 583 ntBASIC20.73■□□□□ 0.91
LRRC53A6NM62 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LRRC53A6NM62 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
LRRC53A6NM62 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LRRC53A6NM62 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
LRRC53A6NM62 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
LRRC53A6NM62 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC20.73■□□□□ 0.91
LRRC53A6NM62 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
LRRC53A6NM62 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
LRRC53A6NM62 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
LRRC53A6NM62 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.73■□□□□ 0.91
LRRC53A6NM62 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
LRRC53A6NM62 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
LRRC53A6NM62 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LRRC53A6NM62 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LRRC53A6NM62 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LRRC53A6NM62 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LRRC53A6NM62 AL031598.1-201ENST00000561511 1773 ntBASIC20.72■□□□□ 0.91
LRRC53A6NM62 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LRRC53A6NM62 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.72■□□□□ 0.91
LRRC53A6NM62 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
LRRC53A6NM62 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC20.72■□□□□ 0.91
LRRC53A6NM62 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LRRC53A6NM62 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
LRRC53A6NM62 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.72■□□□□ 0.91
LRRC53A6NM62 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
LRRC53A6NM62 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
LRRC53A6NM62 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.72■□□□□ 0.91
LRRC53A6NM62 AC069152.1-201ENST00000438030 544 ntBASIC20.72■□□□□ 0.91
LRRC53A6NM62 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.72■□□□□ 0.91
LRRC53A6NM62 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.72■□□□□ 0.91
LRRC53A6NM62 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.72■□□□□ 0.91
LRRC53A6NM62 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.72■□□□□ 0.91
LRRC53A6NM62 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.72■□□□□ 0.91
LRRC53A6NM62 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
LRRC53A6NM62 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LRRC53A6NM62 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
LRRC53A6NM62 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
LRRC53A6NM62 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LRRC53A6NM62 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LRRC53A6NM62 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
LRRC53A6NM62 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
LRRC53A6NM62 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LRRC53A6NM62 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LRRC53A6NM62 UBQLN4P1-201ENST00000461599 1801 ntBASIC20.71■□□□□ 0.91
LRRC53A6NM62 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LRRC53A6NM62 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC20.71■□□□□ 0.91
LRRC53A6NM62 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LRRC53A6NM62 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LRRC53A6NM62 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.71■□□□□ 0.91
LRRC53A6NM62 AC009113.1-201ENST00000570267 2443 ntBASIC20.71■□□□□ 0.91
LRRC53A6NM62 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LRRC53A6NM62 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.71■□□□□ 0.91
LRRC53A6NM62 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LRRC53A6NM62 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.71■□□□□ 0.91
LRRC53A6NM62 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.71■□□□□ 0.91
LRRC53A6NM62 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
LRRC53A6NM62 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LRRC53A6NM62 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
LRRC53A6NM62 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC20.71■□□□□ 0.91
LRRC53A6NM62 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.71■□□□□ 0.91
LRRC53A6NM62 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
LRRC53A6NM62 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
LRRC53A6NM62 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.71■□□□□ 0.91
LRRC53A6NM62 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.91
LRRC53A6NM62 ADK-206ENST00000541550 2222 ntTSL 2 BASIC20.7■□□□□ 0.9
LRRC53A6NM62 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
LRRC53A6NM62 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LRRC53A6NM62 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LRRC53A6NM62 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.7■□□□□ 0.9
LRRC53A6NM62 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.7■□□□□ 0.9
LRRC53A6NM62 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC20.7■□□□□ 0.9
LRRC53A6NM62 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.7■□□□□ 0.9
LRRC53A6NM62 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LRRC53A6NM62 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.7■□□□□ 0.9
LRRC53A6NM62 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.7■□□□□ 0.9
LRRC53A6NM62 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.7■□□□□ 0.9
LRRC53A6NM62 AC133041.1-202ENST00000642053 222 ntBASIC20.7■□□□□ 0.9
LRRC53A6NM62 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
LRRC53A6NM62 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LRRC53A6NM62 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms