Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 PTPA-216ENST00000432651 857 ntTSL 2 BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 SNORA78-201ENST00000459373 127 ntBASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 GRAP-204ENST00000573099 846 ntTSL 3 BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 DECR2-212ENST00000627716 352 ntTSL 2 BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 TP73-202ENST00000354437 2140 ntTSL 5 BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC15.16■□□□□ 0.02
TRAV41A0A0B4J266 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC15.15■□□□□ 0.02
TRAV41A0A0B4J266 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC15.15■□□□□ 0.02
TRAV41A0A0B4J266 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC15.15■□□□□ 0.02
TRAV41A0A0B4J266 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV41A0A0B4J266 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV41A0A0B4J266 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV41A0A0B4J266 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV41A0A0B4J266 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV41A0A0B4J266 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
TRAV41A0A0B4J266 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC15.15■□□□□ 0.02
TRAV41A0A0B4J266 DHDH-203ENST00000522614 776 ntTSL 5 BASIC15.15■□□□□ 0.02
TRAV41A0A0B4J266 MIR4785-201ENST00000585005 73 ntBASIC15.15■□□□□ 0.02
TRAV41A0A0B4J266 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV41A0A0B4J266 AC026471.5-201ENST00000615068 467 ntBASIC15.15■□□□□ 0.02
TRAV41A0A0B4J266 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV41A0A0B4J266 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV41A0A0B4J266 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV41A0A0B4J266 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV41A0A0B4J266 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC15.15■□□□□ 0.02
TRAV41A0A0B4J266 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
TRAV41A0A0B4J266 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV41A0A0B4J266 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV41A0A0B4J266 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC15.15■□□□□ 0.02
TRAV41A0A0B4J266 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC15.15■□□□□ 0.02
TRAV41A0A0B4J266 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 TSPY7P-201ENST00000431358 1114 ntBASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 NUDT16P1-203ENST00000513809 620 ntBASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 MIR4497-201ENST00000583208 89 ntBASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 ABBA01031674.1-201ENST00000635145 728 ntBASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 Z82202.1-201ENST00000623446 1880 ntBASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 KRT17P2-201ENST00000300992 1314 ntBASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV41A0A0B4J266 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV41A0A0B4J266 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV41A0A0B4J266 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV41A0A0B4J266 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC15.13■□□□□ 0.01
TRAV41A0A0B4J266 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV41A0A0B4J266 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV41A0A0B4J266 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV41A0A0B4J266 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC15.13■□□□□ 0.01
TRAV41A0A0B4J266 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV41A0A0B4J266 SDHAP1-207ENST00000440850 2000 ntBASIC15.13■□□□□ 0.01
TRAV41A0A0B4J266 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC15.13■□□□□ 0.01
TRAV41A0A0B4J266 Z85996.1-201ENST00000494644 937 ntBASIC15.13■□□□□ 0.01
TRAV41A0A0B4J266 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV41A0A0B4J266 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC15.13■□□□□ 0.01
TRAV41A0A0B4J266 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC15.13■□□□□ 0.01
TRAV41A0A0B4J266 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC15.13■□□□□ 0.01
TRAV41A0A0B4J266 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC15.13■□□□□ 0.01
TRAV41A0A0B4J266 FSCN1P1-201ENST00000568912 1481 ntBASIC15.13■□□□□ 0.01
TRAV41A0A0B4J266 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV41A0A0B4J266 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms