Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 MIR448-201ENST00000362131 111 ntBASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 RNU6-1249P-201ENST00000363237 111 ntBASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 Y_RNA.408-201ENST00000383987 102 ntBASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 U1.1-201ENST00000384101 164 ntBASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 OR8G2P-201ENST00000412796 908 ntBASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 FNDC3CP-201ENST00000420795 1155 ntBASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 AF213884.1-201ENST00000488102 463 ntBASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 WBP1LP4-201ENST00000505043 344 ntBASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 AC079395.1-201ENST00000510981 262 ntBASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 HIGD1AP17-201ENST00000554576 276 ntBASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 DUXAP3-201ENST00000603616 594 ntBASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 AC011468.4-201ENST00000603942 409 ntBASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 AP001521.1-201ENST00000609150 300 ntBASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 AC010608.2-201ENST00000624830 470 ntBASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 AC120349.2-201ENST00000625002 298 ntBASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 AC138915.3-201ENST00000562908 1389 ntBASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 SPATA31D2P-201ENST00000429999 4388 ntBASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.83□□□□□ -1.8
NUP54Q7Z3B4 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 ZNF876P-202ENST00000398732 1485 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 RNU6-216P-201ENST00000363282 104 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 RNU6-657P-201ENST00000383904 107 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 RNU4-65P-201ENST00000410473 140 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 MTCO2P21-201ENST00000419780 677 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 AL391219.1-201ENST00000422570 483 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 RSL24D1P6-201ENST00000426934 401 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 AL035410.1-201ENST00000427409 427 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 AL050321.1-201ENST00000432363 400 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 ATP5F1P1-201ENST00000433775 569 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 AL353748.1-201ENST00000440753 474 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 ZNF736P8Y-201ENST00000451913 669 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 RPL21P134-201ENST00000453468 483 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 HMGB1P15-201ENST00000453854 435 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 RPS20P24-201ENST00000457473 361 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 RPL36AP13-201ENST00000457490 317 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 snoU13.4-201ENST00000458916 104 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 RNU7-170P-201ENST00000459303 61 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 RPL7P9-201ENST00000468715 747 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 RN7SL271P-201ENST00000487601 295 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 HMGB3P15-201ENST00000507326 574 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 AC116353.3-201ENST00000511215 249 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 AC109445.1-201ENST00000512356 383 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 FABP5P12-201ENST00000515543 389 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 AC125611.1-201ENST00000549563 229 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 AC022655.2-201ENST00000577280 318 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 OR4K7P-201ENST00000580232 945 ntBASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.82□□□□□ -1.8
NUP54Q7Z3B4 AC092106.3-201ENST00000611308 722 ntBASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 127.6 ms