Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC3.89□□□□□ -1.79
MSH3P20585 RNU2-42P-201ENST00000410697 113 ntBASIC3.89□□□□□ -1.79
MSH3P20585 AMD1P2-201ENST00000412936 992 ntBASIC3.89□□□□□ -1.79
MSH3P20585 PRELID3BP11-201ENST00000414230 479 ntBASIC3.89□□□□□ -1.79
MSH3P20585 Z97055.1-201ENST00000419730 712 ntBASIC3.89□□□□□ -1.79
MSH3P20585 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC3.89□□□□□ -1.79
MSH3P20585 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC3.89□□□□□ -1.79
MSH3P20585 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC3.89□□□□□ -1.79
MSH3P20585 UBE2D3P1-201ENST00000436669 444 ntBASIC3.89□□□□□ -1.79
MSH3P20585 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC3.89□□□□□ -1.79
MSH3P20585 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC3.89□□□□□ -1.79
MSH3P20585 RPL23AP15-201ENST00000450202 459 ntBASIC3.89□□□□□ -1.79
MSH3P20585 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC3.89□□□□□ -1.79
MSH3P20585 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC3.89□□□□□ -1.79
MSH3P20585 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
MSH3P20585 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.89□□□□□ -1.79
MSH3P20585 AC010587.2-201ENST00000511727 448 ntBASIC3.89□□□□□ -1.79
MSH3P20585 FTH1P9-201ENST00000513251 355 ntBASIC3.89□□□□□ -1.79
MSH3P20585 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC3.89□□□□□ -1.79
MSH3P20585 AC010342.1-201ENST00000514047 877 ntBASIC3.89□□□□□ -1.79
MSH3P20585 RNU6-488P-201ENST00000515918 99 ntBASIC3.89□□□□□ -1.79
MSH3P20585 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC3.89□□□□□ -1.79
MSH3P20585 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC3.89□□□□□ -1.79
MSH3P20585 PTK2-220ENST00000520151 573 ntTSL 4 BASIC3.89□□□□□ -1.79
MSH3P20585 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.89□□□□□ -1.79
MSH3P20585 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC3.89□□□□□ -1.79
MSH3P20585 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC3.89□□□□□ -1.79
MSH3P20585 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC3.89□□□□□ -1.79
MSH3P20585 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC3.89□□□□□ -1.79
MSH3P20585 SERPINE4P-201ENST00000554978 281 ntBASIC3.89□□□□□ -1.79
MSH3P20585 MIR3160-1-201ENST00000577972 85 ntBASIC3.89□□□□□ -1.79
MSH3P20585 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.89□□□□□ -1.79
MSH3P20585 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC3.89□□□□□ -1.79
MSH3P20585 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC3.89□□□□□ -1.79
MSH3P20585 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC3.89□□□□□ -1.79
MSH3P20585 AL109653.1-201ENST00000603091 248 ntBASIC3.89□□□□□ -1.79
MSH3P20585 AC009220.3-201ENST00000604318 586 ntBASIC3.89□□□□□ -1.79
MSH3P20585 AL354760.1-201ENST00000608357 643 ntBASIC3.89□□□□□ -1.79
MSH3P20585 AL603755.1-201ENST00000619504 163 ntBASIC3.89□□□□□ -1.79
MSH3P20585 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.89□□□□□ -1.79
MSH3P20585 AC068831.8-201ENST00000620171 435 ntBASIC3.89□□□□□ -1.79
MSH3P20585 AC026422.1-201ENST00000623961 452 ntBASIC3.89□□□□□ -1.79
MSH3P20585 AL512506.2-201ENST00000624472 458 ntBASIC3.89□□□□□ -1.79
MSH3P20585 MIR3974-201ENST00000637126 96 ntBASIC3.89□□□□□ -1.79
MSH3P20585 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
MSH3P20585 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
MSH3P20585 AC026951.1-201ENST00000559530 2459 ntBASIC3.89□□□□□ -1.79
MSH3P20585 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
MSH3P20585 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
MSH3P20585 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
MSH3P20585 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.89□□□□□ -1.79
MSH3P20585 ZNF736P9Y-201ENST00000439586 1345 ntBASIC3.89□□□□□ -1.79
MSH3P20585 ZNF542P-204ENST00000482727 1305 ntBASIC3.89□□□□□ -1.79
MSH3P20585 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC3.89□□□□□ -1.79
MSH3P20585 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
MSH3P20585 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.88□□□□□ -1.79
MSH3P20585 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.88□□□□□ -1.79
MSH3P20585 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
MSH3P20585 TAF9BP1-201ENST00000396646 746 ntBASIC3.88□□□□□ -1.79
MSH3P20585 RPL23AP47-201ENST00000408017 460 ntBASIC3.88□□□□□ -1.79
MSH3P20585 RN7SKP177-201ENST00000410567 355 ntBASIC3.88□□□□□ -1.79
MSH3P20585 TEX41-202ENST00000414256 604 ntTSL 5 BASIC3.88□□□□□ -1.79
MSH3P20585 AC011233.1-201ENST00000422812 283 ntBASIC3.88□□□□□ -1.79
MSH3P20585 AC233981.1-201ENST00000423224 461 ntBASIC3.88□□□□□ -1.79
MSH3P20585 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC3.88□□□□□ -1.79
MSH3P20585 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC3.88□□□□□ -1.79
MSH3P20585 TRAPPC2P9-201ENST00000434556 343 ntBASIC3.88□□□□□ -1.79
MSH3P20585 AC083863.1-201ENST00000438811 231 ntBASIC3.88□□□□□ -1.79
MSH3P20585 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC3.88□□□□□ -1.79
MSH3P20585 AL109741.2-201ENST00000455561 343 ntBASIC3.88□□□□□ -1.79
MSH3P20585 RPS15AP1-201ENST00000457423 391 ntBASIC3.88□□□□□ -1.79
MSH3P20585 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.88□□□□□ -1.79
MSH3P20585 AC010307.1-201ENST00000467206 836 ntBASIC3.88□□□□□ -1.79
MSH3P20585 HMGB1P21-201ENST00000502313 581 ntBASIC3.88□□□□□ -1.79
MSH3P20585 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC3.88□□□□□ -1.79
MSH3P20585 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
MSH3P20585 RPL7L1P13-201ENST00000511702 739 ntBASIC3.88□□□□□ -1.79
MSH3P20585 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC3.88□□□□□ -1.79
MSH3P20585 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC3.88□□□□□ -1.79
MSH3P20585 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC3.88□□□□□ -1.79
MSH3P20585 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC3.88□□□□□ -1.79
MSH3P20585 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.88□□□□□ -1.79
MSH3P20585 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC3.88□□□□□ -1.79
MSH3P20585 ELOCP32-201ENST00000548625 324 ntBASIC3.88□□□□□ -1.79
MSH3P20585 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.88□□□□□ -1.79
MSH3P20585 CASC16-202ENST00000563844 610 ntTSL 3 BASIC3.88□□□□□ -1.79
MSH3P20585 AC093519.1-201ENST00000566109 298 ntBASIC3.88□□□□□ -1.79
MSH3P20585 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC3.88□□□□□ -1.79
MSH3P20585 MIR4644-201ENST00000579929 84 ntBASIC3.88□□□□□ -1.79
MSH3P20585 AC053481.4-201ENST00000583164 216 ntBASIC3.88□□□□□ -1.79
MSH3P20585 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.88□□□□□ -1.79
MSH3P20585 MIR4999-201ENST00000585029 91 ntBASIC3.88□□□□□ -1.79
MSH3P20585 VN1R85P-201ENST00000601587 426 ntBASIC3.88□□□□□ -1.79
MSH3P20585 Z99497.2-201ENST00000603634 310 ntBASIC3.88□□□□□ -1.79
MSH3P20585 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC3.88□□□□□ -1.79
MSH3P20585 MKKS-204ENST00000639674 192 ntBASIC3.88□□□□□ -1.79
MSH3P20585 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
MSH3P20585 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
MSH3P20585 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.88□□□□□ -1.79
MSH3P20585 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 151.8 ms