Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 RPL18AP17-201ENST00000455326 198 ntBASIC5.31□□□□□ -1.56
COL6A1P12109 RN7SL303P-201ENST00000469773 251 ntBASIC5.31□□□□□ -1.56
COL6A1P12109 RPL7P19-201ENST00000469948 618 ntBASIC5.31□□□□□ -1.56
COL6A1P12109 AP000852.1-201ENST00000472460 573 ntBASIC5.31□□□□□ -1.56
COL6A1P12109 AC008628.2-201ENST00000502605 298 ntBASIC5.31□□□□□ -1.56
COL6A1P12109 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC5.31□□□□□ -1.56
COL6A1P12109 RNU6-430P-201ENST00000517078 107 ntBASIC5.31□□□□□ -1.56
COL6A1P12109 Y_RNA.719-201ENST00000517156 106 ntBASIC5.31□□□□□ -1.56
COL6A1P12109 MIR2116-201ENST00000517221 80 ntBASIC5.31□□□□□ -1.56
COL6A1P12109 RGS4-207ENST00000527809 817 ntTSL 4 BASIC5.31□□□□□ -1.56
COL6A1P12109 GLYCAM1-201ENST00000546596 285 ntBASIC5.31□□□□□ -1.56
COL6A1P12109 TRAV15-201ENST00000556680 249 ntBASIC5.31□□□□□ -1.56
COL6A1P12109 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC5.31□□□□□ -1.56
COL6A1P12109 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC5.31□□□□□ -1.56
COL6A1P12109 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC5.31□□□□□ -1.56
COL6A1P12109 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC5.31□□□□□ -1.56
COL6A1P12109 C8orf59P2-201ENST00000603441 271 ntBASIC5.31□□□□□ -1.56
COL6A1P12109 AL121932.1-201ENST00000605542 214 ntBASIC5.31□□□□□ -1.56
COL6A1P12109 AC009994.1-201ENST00000606889 253 ntBASIC5.31□□□□□ -1.56
COL6A1P12109 AC090948.1-201ENST00000607464 549 ntBASIC5.31□□□□□ -1.56
COL6A1P12109 AC092954.2-201ENST00000609103 430 ntBASIC5.31□□□□□ -1.56
COL6A1P12109 AC023043.4-201ENST00000612081 449 ntBASIC5.31□□□□□ -1.56
COL6A1P12109 AC008250.2-201ENST00000615261 205 ntBASIC5.31□□□□□ -1.56
COL6A1P12109 AP001506.1-201ENST00000615444 211 ntBASIC5.31□□□□□ -1.56
COL6A1P12109 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC5.31□□□□□ -1.56
COL6A1P12109 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC5.31□□□□□ -1.56
COL6A1P12109 AC093591.3-201ENST00000634516 308 ntBASIC5.31□□□□□ -1.56
COL6A1P12109 SALL4P2-201ENST00000423288 2910 ntBASIC5.31□□□□□ -1.56
COL6A1P12109 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL6A1P12109 AL356489.2-201ENST00000566968 3528 ntBASIC5.31□□□□□ -1.56
COL6A1P12109 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL6A1P12109 HSP90AA5P-201ENST00000438353 2192 ntBASIC5.31□□□□□ -1.56
COL6A1P12109 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL6A1P12109 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL6A1P12109 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL6A1P12109 AL139811.1-201ENST00000424779 2299 ntBASIC5.3□□□□□ -1.56
COL6A1P12109 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL6A1P12109 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL6A1P12109 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
COL6A1P12109 RNY4P14-201ENST00000363656 96 ntBASIC5.3□□□□□ -1.56
COL6A1P12109 RNU6-1279P-201ENST00000383917 103 ntBASIC5.3□□□□□ -1.56
COL6A1P12109 Y_RNA.402-201ENST00000383972 102 ntBASIC5.3□□□□□ -1.56
COL6A1P12109 RNA5SP171-201ENST00000391071 115 ntBASIC5.3□□□□□ -1.56
COL6A1P12109 RPS24P12-201ENST00000402084 394 ntBASIC5.3□□□□□ -1.56
COL6A1P12109 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC5.3□□□□□ -1.56
COL6A1P12109 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC5.3□□□□□ -1.56
COL6A1P12109 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC5.3□□□□□ -1.56
COL6A1P12109 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC5.3□□□□□ -1.56
COL6A1P12109 AL356583.2-201ENST00000426536 280 ntBASIC5.3□□□□□ -1.56
COL6A1P12109 AL451062.2-201ENST00000427515 271 ntBASIC5.3□□□□□ -1.56
COL6A1P12109 RPL37P21-201ENST00000435890 276 ntBASIC5.3□□□□□ -1.56
COL6A1P12109 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC5.3□□□□□ -1.56
COL6A1P12109 NUTF2P3-201ENST00000448540 384 ntBASIC5.3□□□□□ -1.56
COL6A1P12109 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC5.3□□□□□ -1.56
COL6A1P12109 UBDP1-202ENST00000457888 382 ntBASIC5.3□□□□□ -1.56
COL6A1P12109 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC5.3□□□□□ -1.56
COL6A1P12109 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC5.3□□□□□ -1.56
COL6A1P12109 NDUFB4P2-201ENST00000509515 391 ntBASIC5.3□□□□□ -1.56
COL6A1P12109 AC015795.1-201ENST00000513669 327 ntBASIC5.3□□□□□ -1.56
COL6A1P12109 MTND5P4-201ENST00000514978 288 ntBASIC5.3□□□□□ -1.56
COL6A1P12109 RNU6-513P-201ENST00000516104 104 ntBASIC5.3□□□□□ -1.56
COL6A1P12109 RNU1-6P-201ENST00000516290 144 ntBASIC5.3□□□□□ -1.56
COL6A1P12109 MTCO2P4-201ENST00000517968 247 ntBASIC5.3□□□□□ -1.56
COL6A1P12109 LY96-202ENST00000518893 430 ntTSL 3 BASIC5.3□□□□□ -1.56
COL6A1P12109 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC5.3□□□□□ -1.56
COL6A1P12109 OR5M7P-201ENST00000526140 972 ntBASIC5.3□□□□□ -1.56
COL6A1P12109 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC5.3□□□□□ -1.56
COL6A1P12109 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL6A1P12109 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL6A1P12109 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC5.3□□□□□ -1.56
COL6A1P12109 MIR3913-1-201ENST00000577744 102 ntBASIC5.3□□□□□ -1.56
COL6A1P12109 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC5.3□□□□□ -1.56
COL6A1P12109 AC078795.3-201ENST00000602913 472 ntBASIC5.3□□□□□ -1.56
COL6A1P12109 DUXAP4-201ENST00000603046 613 ntBASIC5.3□□□□□ -1.56
COL6A1P12109 AC091488.1-201ENST00000604239 660 ntBASIC5.3□□□□□ -1.56
COL6A1P12109 AL590282.1-201ENST00000610379 1136 ntBASIC5.3□□□□□ -1.56
COL6A1P12109 AL121757.2-201ENST00000611223 313 ntBASIC5.3□□□□□ -1.56
COL6A1P12109 AC009033.1-201ENST00000624279 431 ntBASIC5.3□□□□□ -1.56
COL6A1P12109 AC120349.2-201ENST00000625002 298 ntBASIC5.3□□□□□ -1.56
COL6A1P12109 MIR6863-201ENST00000636112 90 ntBASIC5.3□□□□□ -1.56
COL6A1P12109 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC5.3□□□□□ -1.56
COL6A1P12109 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.3□□□□□ -1.56
COL6A1P12109 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.3□□□□□ -1.56
COL6A1P12109 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL6A1P12109 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL6A1P12109 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
COL6A1P12109 USP44-208ENST00000552440 1818 ntTSL 5 BASIC5.3□□□□□ -1.56
COL6A1P12109 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
COL6A1P12109 ZNF37BP-203ENST00000452306 1352 ntBASIC5.29□□□□□ -1.56
COL6A1P12109 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL6A1P12109 AC017104.4-201ENST00000636283 1592 ntBASIC5.29□□□□□ -1.56
COL6A1P12109 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL6A1P12109 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL6A1P12109 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL6A1P12109 LINC00561-201ENST00000565815 2738 ntBASIC5.29□□□□□ -1.56
COL6A1P12109 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
COL6A1P12109 PCAT14-202ENST00000627127 3935 ntBASIC5.29□□□□□ -1.56
COL6A1P12109 AL512646.1-201ENST00000269395 1077 ntBASIC5.29□□□□□ -1.56
COL6A1P12109 U3.15-201ENST00000365398 212 ntBASIC5.29□□□□□ -1.56
COL6A1P12109 CUBN-201ENST00000377823 705 ntTSL 3 BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 200.9 ms