Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 OLMALINC-203ENST00000641087 3779 ntBASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 Y_RNA.424-201ENST00000384063 103 ntBASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 SNORA41-201ENST00000384675 132 ntBASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 AL391361.1-201ENST00000405580 489 ntBASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 AL590632.1-201ENST00000424289 371 ntBASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 RPL7P37-201ENST00000425095 738 ntBASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 RPL23AP33-201ENST00000442301 452 ntBASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 AL359672.1-201ENST00000442302 409 ntBASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 MTCO3P45-201ENST00000443036 613 ntBASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 AP000281.1-201ENST00000444036 316 ntBASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 AC005077.1-201ENST00000449226 375 ntBASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 AL445665.1-202ENST00000452436 324 ntBASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 AP001086.1-201ENST00000494882 321 ntBASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 AC107222.1-201ENST00000510899 637 ntBASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 MTCO3P44-201ENST00000510977 541 ntBASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 AC022882.1-201ENST00000532142 501 ntBASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 RPL23AP84-201ENST00000571193 464 ntBASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 RNA5SP440-201ENST00000612665 119 ntBASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 TUG1_2.1-201ENST00000614234 87 ntBASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 AL359547.2-201ENST00000615810 418 ntBASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
LIMD1Q9UGP4 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 OR7A17-202ENST00000641113 3639 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 RNU6-715P-201ENST00000365204 103 ntBASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 Y_RNA.552-201ENST00000384665 112 ntBASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 RNU6-95P-201ENST00000384697 107 ntBASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 TRAV19-201ENST00000390447 467 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 MIR1203-201ENST00000408812 85 ntBASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 RNU2-23P-201ENST00000410545 195 ntBASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 RNU2-47P-201ENST00000410649 186 ntBASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 RN7SKP293-201ENST00000411389 296 ntBASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 RPL23AP50-201ENST00000434149 455 ntBASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 MRPS18BP2-201ENST00000434310 759 ntBASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 AC073410.1-201ENST00000435125 589 ntBASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 AL162389.1-201ENST00000449233 177 ntBASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 AC010683.1-201ENST00000473673 378 ntBASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 SCARNA16.2-201ENST00000516520 172 ntBASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 AC063949.1-201ENST00000552900 865 ntBASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 OR7E18P-201ENST00000592589 702 ntBASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 MAPK10-270ENST00000641102 3538 ntBASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 PHKBP1-201ENST00000450951 1951 ntBASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 DMD-205ENST00000359836 7339 ntTSL 5 BASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC6.49□□□□□ -1.37
LIMD1Q9UGP4 PLD5-203ENST00000427495 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC6.49□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms