Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 MTCO1P4-201ENST00000520516 1409 ntBASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 SNORD3H-201ENST00000384486 214 ntBASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 SNORA48.7-201ENST00000391302 135 ntBASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 HMGB3P19-201ENST00000403971 560 ntBASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 STAT4-203ENST00000409995 709 ntTSL 5 BASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 RN7SKP33-201ENST00000410942 340 ntBASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 AC002075.2-201ENST00000425207 252 ntBASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 RPL7P2-201ENST00000427639 268 ntBASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 RPL21P40-201ENST00000428586 483 ntBASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 HIGD1AP4-201ENST00000430194 280 ntBASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 RABEPKP1-201ENST00000440529 1026 ntBASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 AL592437.1-201ENST00000443781 492 ntBASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 OR51B8P-201ENST00000449892 769 ntBASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 AL445669.2-201ENST00000454425 421 ntBASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 AC108078.3-201ENST00000502633 489 ntBASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 AC096751.1-202ENST00000502691 1067 ntBASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 AC121161.1-201ENST00000510606 652 ntBASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 AC026412.2-201ENST00000512270 1075 ntBASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 RN7SKP209-201ENST00000516888 304 ntBASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 SUMO2P20-201ENST00000520803 283 ntBASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 AP001804.3-201ENST00000525146 880 ntBASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 AP003168.1-201ENST00000530091 307 ntBASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 SNRPGP16-201ENST00000533275 226 ntBASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 EEF1B2P4-201ENST00000551398 348 ntBASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 AC126177.3-201ENST00000551839 688 ntBASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 AC090877.1-201ENST00000561418 344 ntBASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 RN7SL622P-201ENST00000585292 275 ntBASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 AC099778.2-201ENST00000610904 211 ntBASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 RNVU1-4-201ENST00000612985 164 ntBASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 GDI2P1-201ENST00000429312 1336 ntBASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 AC025750.1-201ENST00000399891 379 ntBASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 RN7SKP202-201ENST00000410439 330 ntBASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 BX664727.1-201ENST00000416024 466 ntBASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 AL356095.1-201ENST00000417217 199 ntBASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 DEFB130D-201ENST00000426866 237 ntBASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 AL117339.2-201ENST00000430475 180 ntBASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 HMGB3P8-201ENST00000449709 577 ntBASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 RPL38P1-201ENST00000460914 211 ntBASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 AC006483.1-201ENST00000487308 313 ntBASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 RN7SL604P-201ENST00000492589 296 ntBASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 KLHL2P1-201ENST00000508691 521 ntBASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 AC027338.1-201ENST00000514840 825 ntBASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 MTCO1P49-201ENST00000523429 802 ntBASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 AL389895.1-201ENST00000554127 252 ntBASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 COX6CP3-201ENST00000580869 223 ntBASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 BNIP3P33-201ENST00000598912 569 ntBASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 AC010738.1-201ENST00000604970 987 ntBASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 AC040168.1-201ENST00000623594 991 ntBASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
ZNF540Q8NDQ6 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 SAR1AP2-201ENST00000392696 594 ntBASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 90.8 ms