Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 RPL21P109-201ENST00000422213 475 ntBASIC3.38□□□□□ -1.87
SHHQ15465 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC3.38□□□□□ -1.87
SHHQ15465 AL356806.1-201ENST00000422524 916 ntBASIC3.38□□□□□ -1.87
SHHQ15465 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC3.38□□□□□ -1.87
SHHQ15465 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC3.38□□□□□ -1.87
SHHQ15465 AC011242.1-201ENST00000433596 1158 ntBASIC3.38□□□□□ -1.87
SHHQ15465 AC016696.1-201ENST00000446949 318 ntBASIC3.38□□□□□ -1.87
SHHQ15465 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC3.38□□□□□ -1.87
SHHQ15465 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC3.38□□□□□ -1.87
SHHQ15465 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.38□□□□□ -1.87
SHHQ15465 PCNAP1-201ENST00000505363 709 ntBASIC3.38□□□□□ -1.87
SHHQ15465 RN7SKP272-201ENST00000516988 232 ntBASIC3.38□□□□□ -1.87
SHHQ15465 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
SHHQ15465 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.38□□□□□ -1.87
SHHQ15465 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.38□□□□□ -1.87
SHHQ15465 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC3.38□□□□□ -1.87
SHHQ15465 AC138761.3-201ENST00000579993 334 ntBASIC3.38□□□□□ -1.87
SHHQ15465 NF1P5-201ENST00000588287 448 ntBASIC3.38□□□□□ -1.87
SHHQ15465 AC026790.2-201ENST00000606282 430 ntBASIC3.38□□□□□ -1.87
SHHQ15465 uc_338.25-201ENST00000613756 156 ntBASIC3.38□□□□□ -1.87
SHHQ15465 C2orf27A-204ENST00000623058 969 ntBASIC3.38□□□□□ -1.87
SHHQ15465 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC3.38□□□□□ -1.87
SHHQ15465 HPVC1-201ENST00000629899 1198 ntBASIC3.38□□□□□ -1.87
SHHQ15465 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC3.38□□□□□ -1.87
SHHQ15465 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
SHHQ15465 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.37□□□□□ -1.87
SHHQ15465 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.37□□□□□ -1.87
SHHQ15465 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
SHHQ15465 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
SHHQ15465 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.37□□□□□ -1.87
SHHQ15465 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.37□□□□□ -1.87
SHHQ15465 AL589826.1-201ENST00000340697 249 ntBASIC3.37□□□□□ -1.87
SHHQ15465 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.37□□□□□ -1.87
SHHQ15465 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.37□□□□□ -1.87
SHHQ15465 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC3.37□□□□□ -1.87
SHHQ15465 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC3.37□□□□□ -1.87
SHHQ15465 USP9YP7-201ENST00000436723 430 ntBASIC3.37□□□□□ -1.87
SHHQ15465 ZNF736P1Y-201ENST00000440402 1276 ntBASIC3.37□□□□□ -1.87
SHHQ15465 XKRYP6-201ENST00000440468 1116 ntBASIC3.37□□□□□ -1.87
SHHQ15465 AC009263.1-201ENST00000441193 1239 ntBASIC3.37□□□□□ -1.87
SHHQ15465 XKRYP3-201ENST00000442113 1116 ntBASIC3.37□□□□□ -1.87
SHHQ15465 TPMTP4-201ENST00000450749 678 ntBASIC3.37□□□□□ -1.87
SHHQ15465 USP9YP32-201ENST00000452432 430 ntBASIC3.37□□□□□ -1.87
SHHQ15465 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SHHQ15465 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.37□□□□□ -1.87
SHHQ15465 PRDX3P4-201ENST00000470828 747 ntBASIC3.37□□□□□ -1.87
SHHQ15465 AP002884.2-201ENST00000471647 395 ntBASIC3.37□□□□□ -1.87
SHHQ15465 AL049830.2-201ENST00000480072 201 ntBASIC3.37□□□□□ -1.87
SHHQ15465 HMGB1P3-201ENST00000502802 616 ntBASIC3.37□□□□□ -1.87
SHHQ15465 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.37□□□□□ -1.87
SHHQ15465 HIGD1AP13-201ENST00000509878 289 ntBASIC3.37□□□□□ -1.87
SHHQ15465 RNA5SP309-201ENST00000516670 106 ntBASIC3.37□□□□□ -1.87
SHHQ15465 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SHHQ15465 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC3.37□□□□□ -1.87
SHHQ15465 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.37□□□□□ -1.87
SHHQ15465 AC067805.1-201ENST00000559344 470 ntBASIC3.37□□□□□ -1.87
SHHQ15465 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC3.37□□□□□ -1.87
SHHQ15465 AC009268.1-201ENST00000561352 1203 ntBASIC3.37□□□□□ -1.87
SHHQ15465 MIR4458-201ENST00000578872 75 ntBASIC3.37□□□□□ -1.87
SHHQ15465 MIR4524B-201ENST00000581569 115 ntBASIC3.37□□□□□ -1.87
SHHQ15465 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC3.37□□□□□ -1.87
SHHQ15465 BNIP3P38-201ENST00000601117 544 ntBASIC3.37□□□□□ -1.87
SHHQ15465 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
SHHQ15465 AC231759.1-201ENST00000616455 597 ntBASIC3.37□□□□□ -1.87
SHHQ15465 SNORD39.4-201ENST00000620099 78 ntBASIC3.37□□□□□ -1.87
SHHQ15465 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
SHHQ15465 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC3.37□□□□□ -1.87
SHHQ15465 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC3.37□□□□□ -1.87
SHHQ15465 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.37□□□□□ -1.87
SHHQ15465 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SHHQ15465 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SHHQ15465 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
SHHQ15465 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SHHQ15465 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.37□□□□□ -1.87
SHHQ15465 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
SHHQ15465 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
SHHQ15465 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
SHHQ15465 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SHHQ15465 AL672167.1-206ENST00000356293 943 ntBASIC3.36□□□□□ -1.87
SHHQ15465 MIR22-201ENST00000362190 85 ntBASIC3.36□□□□□ -1.87
SHHQ15465 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
SHHQ15465 RNA5SP229-201ENST00000410809 99 ntBASIC3.36□□□□□ -1.87
SHHQ15465 ZNF92P1Y-201ENST00000415010 1191 ntBASIC3.36□□□□□ -1.87
SHHQ15465 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC3.36□□□□□ -1.87
SHHQ15465 FAM204CP-201ENST00000424489 642 ntBASIC3.36□□□□□ -1.87
SHHQ15465 AC063976.3-201ENST00000426849 329 ntBASIC3.36□□□□□ -1.87
SHHQ15465 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC3.36□□□□□ -1.87
SHHQ15465 CBX1P4-201ENST00000439415 457 ntBASIC3.36□□□□□ -1.87
SHHQ15465 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC3.36□□□□□ -1.87
SHHQ15465 NECAP1P2-201ENST00000455668 727 ntBASIC3.36□□□□□ -1.87
SHHQ15465 MTND2P39-201ENST00000457230 764 ntBASIC3.36□□□□□ -1.87
SHHQ15465 RPL23AP67-201ENST00000465341 474 ntBASIC3.36□□□□□ -1.87
SHHQ15465 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.36□□□□□ -1.87
SHHQ15465 RPS17P11-201ENST00000474297 293 ntBASIC3.36□□□□□ -1.87
SHHQ15465 AC087385.1-201ENST00000475062 312 ntBASIC3.36□□□□□ -1.87
SHHQ15465 RPS4XP13-201ENST00000483219 789 ntBASIC3.36□□□□□ -1.87
SHHQ15465 AC021087.2-201ENST00000504656 1203 ntBASIC3.36□□□□□ -1.87
SHHQ15465 MTND3P3-201ENST00000505004 126 ntBASIC3.36□□□□□ -1.87
SHHQ15465 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
SHHQ15465 AC104997.1-201ENST00000519761 717 ntBASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms