Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.14□□□□□ -1.91
COL4A1P02462 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.14□□□□□ -1.91
COL4A1P02462 AC103810.6-201ENST00000606708 136 ntBASIC3.14□□□□□ -1.91
COL4A1P02462 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.14□□□□□ -1.91
COL4A1P02462 AC092608.2-201ENST00000624427 218 ntBASIC3.14□□□□□ -1.91
COL4A1P02462 AC079228.1-201ENST00000624774 1049 ntBASIC3.14□□□□□ -1.91
COL4A1P02462 AC016717.2-201ENST00000609089 5141 ntBASIC3.14□□□□□ -1.91
COL4A1P02462 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC3.14□□□□□ -1.91
COL4A1P02462 AC069528.2-201ENST00000624849 1991 ntBASIC3.14□□□□□ -1.91
COL4A1P02462 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.13□□□□□ -1.91
COL4A1P02462 OR52B1P-201ENST00000316506 909 ntBASIC3.13□□□□□ -1.91
COL4A1P02462 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
COL4A1P02462 RNVU1-3-201ENST00000364313 161 ntBASIC3.13□□□□□ -1.91
COL4A1P02462 NANOGP5-201ENST00000424456 877 ntBASIC3.13□□□□□ -1.91
COL4A1P02462 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC3.13□□□□□ -1.91
COL4A1P02462 TXNP6-201ENST00000510190 310 ntBASIC3.13□□□□□ -1.91
COL4A1P02462 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.13□□□□□ -1.91
COL4A1P02462 RN7SKP283-201ENST00000517197 270 ntBASIC3.13□□□□□ -1.91
COL4A1P02462 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC3.13□□□□□ -1.91
COL4A1P02462 MIR3605-201ENST00000583214 100 ntBASIC3.13□□□□□ -1.91
COL4A1P02462 AC025946.2-201ENST00000603398 234 ntBASIC3.13□□□□□ -1.91
COL4A1P02462 MTND5P19-201ENST00000424872 1794 ntBASIC3.13□□□□□ -1.91
COL4A1P02462 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
COL4A1P02462 CDC27P2-201ENST00000425026 1922 ntBASIC3.13□□□□□ -1.91
COL4A1P02462 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
COL4A1P02462 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
COL4A1P02462 SNORA36C-201ENST00000384289 132 ntBASIC3.12□□□□□ -1.91
COL4A1P02462 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.12□□□□□ -1.91
COL4A1P02462 AC080125.1-201ENST00000414888 684 ntBASIC3.12□□□□□ -1.91
COL4A1P02462 AL356806.1-201ENST00000422524 916 ntBASIC3.12□□□□□ -1.91
COL4A1P02462 RPS20P32-201ENST00000456044 356 ntBASIC3.12□□□□□ -1.91
COL4A1P02462 IGKV3-31-201ENST00000523109 329 ntBASIC3.12□□□□□ -1.91
COL4A1P02462 AP000857.1-201ENST00000532151 543 ntBASIC3.12□□□□□ -1.91
COL4A1P02462 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.12□□□□□ -1.91
COL4A1P02462 AC011492.1-201ENST00000600023 315 ntBASIC3.12□□□□□ -1.91
COL4A1P02462 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
COL4A1P02462 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
COL4A1P02462 AC093775.1-201ENST00000624154 1868 ntBASIC3.12□□□□□ -1.91
COL4A1P02462 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
COL4A1P02462 RPL9P7-201ENST00000330965 580 ntBASIC3.11□□□□□ -1.91
COL4A1P02462 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.11□□□□□ -1.91
COL4A1P02462 RPL23AP74-201ENST00000437246 471 ntBASIC3.11□□□□□ -1.91
COL4A1P02462 AC008280.2-201ENST00000455473 307 ntBASIC3.11□□□□□ -1.91
COL4A1P02462 RN7SKP24-201ENST00000515888 284 ntBASIC3.11□□□□□ -1.91
COL4A1P02462 AP001207.1-201ENST00000524051 481 ntBASIC3.11□□□□□ -1.91
COL4A1P02462 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC3.11□□□□□ -1.91
COL4A1P02462 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.11□□□□□ -1.91
COL4A1P02462 LINC00901.1-201ENST00000617252 152 ntBASIC3.11□□□□□ -1.91
COL4A1P02462 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
COL4A1P02462 AC092881.1-201ENST00000638218 2733 ntBASIC3.11□□□□□ -1.91
COL4A1P02462 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
COL4A1P02462 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
COL4A1P02462 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC3.11□□□□□ -1.91
COL4A1P02462 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
COL4A1P02462 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
COL4A1P02462 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
COL4A1P02462 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
COL4A1P02462 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
COL4A1P02462 SNORA79B-201ENST00000410557 148 ntBASIC3.11□□□□□ -1.91
COL4A1P02462 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.11□□□□□ -1.91
COL4A1P02462 AC003685.2-201ENST00000422795 395 ntBASIC3.11□□□□□ -1.91
COL4A1P02462 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.11□□□□□ -1.91
COL4A1P02462 RPL23AP23-201ENST00000452590 471 ntBASIC3.11□□□□□ -1.91
COL4A1P02462 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC3.11□□□□□ -1.91
COL4A1P02462 NECAP1P2-201ENST00000455668 727 ntBASIC3.11□□□□□ -1.91
COL4A1P02462 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.11□□□□□ -1.91
COL4A1P02462 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.11□□□□□ -1.91
COL4A1P02462 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
COL4A1P02462 SNORA9.3-201ENST00000516383 129 ntBASIC3.11□□□□□ -1.91
COL4A1P02462 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC3.11□□□□□ -1.91
COL4A1P02462 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC3.11□□□□□ -1.91
COL4A1P02462 AL008729.2-201ENST00000606393 473 ntBASIC3.11□□□□□ -1.91
COL4A1P02462 RNU6-84P-201ENST00000607737 102 ntBASIC3.11□□□□□ -1.91
COL4A1P02462 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.11□□□□□ -1.91
COL4A1P02462 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC3.11□□□□□ -1.91
COL4A1P02462 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
COL4A1P02462 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
COL4A1P02462 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
COL4A1P02462 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
COL4A1P02462 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.1□□□□□ -1.91
COL4A1P02462 MIR27B-201ENST00000385129 97 ntBASIC3.1□□□□□ -1.91
COL4A1P02462 MIR764-201ENST00000390811 85 ntBASIC3.1□□□□□ -1.91
COL4A1P02462 RNA5SP210-201ENST00000391034 120 ntBASIC3.1□□□□□ -1.91
COL4A1P02462 XIST-201ENST00000416330 750 ntTSL 2 BASIC3.1□□□□□ -1.91
COL4A1P02462 SETP10-201ENST00000424368 814 ntBASIC3.1□□□□□ -1.91
COL4A1P02462 AC092013.1-201ENST00000438795 332 ntBASIC3.1□□□□□ -1.91
COL4A1P02462 HMGN1P5-201ENST00000448591 263 ntBASIC3.1□□□□□ -1.91
COL4A1P02462 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.1□□□□□ -1.91
COL4A1P02462 RPS29P21-201ENST00000496272 170 ntBASIC3.1□□□□□ -1.91
COL4A1P02462 CKS1BP7-201ENST00000522230 235 ntBASIC3.1□□□□□ -1.91
COL4A1P02462 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC3.1□□□□□ -1.91
COL4A1P02462 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.1□□□□□ -1.91
COL4A1P02462 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC3.1□□□□□ -1.91
COL4A1P02462 AC008277.2-201ENST00000605196 797 ntBASIC3.1□□□□□ -1.91
COL4A1P02462 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC3.1□□□□□ -1.91
COL4A1P02462 AP001005.3-201ENST00000622049 129 ntBASIC3.1□□□□□ -1.91
COL4A1P02462 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.1□□□□□ -1.91
COL4A1P02462 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
COL4A1P02462 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.91
COL4A1P02462 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms