Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC093673.2-201ENST00000609674 331 ntBASIC2.6□□□□□ -1.99
VPS13AQ96RL7 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
VPS13AQ96RL7 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
VPS13AQ96RL7 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
VPS13AQ96RL7 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC2.6□□□□□ -1.99
VPS13AQ96RL7 AC107081.3-201ENST00000612715 2034 ntBASIC2.6□□□□□ -1.99
VPS13AQ96RL7 RPL7P10-201ENST00000417407 739 ntBASIC2.6□□□□□ -1.99
VPS13AQ96RL7 RPL23AP4-201ENST00000427757 463 ntBASIC2.6□□□□□ -1.99
VPS13AQ96RL7 AL513043.1-201ENST00000439124 535 ntBASIC2.6□□□□□ -1.99
VPS13AQ96RL7 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.6□□□□□ -1.99
VPS13AQ96RL7 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC2.6□□□□□ -1.99
VPS13AQ96RL7 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC2.6□□□□□ -1.99
VPS13AQ96RL7 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC2.6□□□□□ -1.99
VPS13AQ96RL7 NARSP2-201ENST00000518524 679 ntBASIC2.6□□□□□ -1.99
VPS13AQ96RL7 AC104454.1-201ENST00000421341 1401 ntBASIC2.6□□□□□ -1.99
VPS13AQ96RL7 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
VPS13AQ96RL7 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
VPS13AQ96RL7 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
VPS13AQ96RL7 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC2.6□□□□□ -1.99
VPS13AQ96RL7 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
VPS13AQ96RL7 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
VPS13AQ96RL7 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
VPS13AQ96RL7 RPS29P6-201ENST00000438196 145 ntBASIC2.59□□□□□ -1.99
VPS13AQ96RL7 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.59□□□□□ -1.99
VPS13AQ96RL7 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.59□□□□□ -1.99
VPS13AQ96RL7 OR1AB1P-201ENST00000585564 761 ntBASIC2.59□□□□□ -1.99
VPS13AQ96RL7 AC010928.3-201ENST00000587712 541 ntBASIC2.59□□□□□ -1.99
VPS13AQ96RL7 AL136981.2-201ENST00000617319 734 ntBASIC2.59□□□□□ -1.99
VPS13AQ96RL7 AC020633.1-201ENST00000468439 2247 ntBASIC2.59□□□□□ -1.99
VPS13AQ96RL7 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -1.99
VPS13AQ96RL7 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
VPS13AQ96RL7 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC2.59□□□□□ -1.99
VPS13AQ96RL7 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -1.99
VPS13AQ96RL7 RNU6-253P-201ENST00000384730 105 ntBASIC2.59□□□□□ -1.99
VPS13AQ96RL7 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
VPS13AQ96RL7 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
VPS13AQ96RL7 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC2.59□□□□□ -1.99
VPS13AQ96RL7 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC2.59□□□□□ -1.99
VPS13AQ96RL7 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
VPS13AQ96RL7 AL592494.2-201ENST00000425455 1548 ntBASIC2.59□□□□□ -2
VPS13AQ96RL7 AC012020.1-201ENST00000624541 1728 ntBASIC2.59□□□□□ -2
VPS13AQ96RL7 SETP15-201ENST00000412724 337 ntBASIC2.59□□□□□ -2
VPS13AQ96RL7 RPS12P2-201ENST00000439728 269 ntBASIC2.59□□□□□ -2
VPS13AQ96RL7 AC106872.3-201ENST00000495104 446 ntBASIC2.59□□□□□ -2
VPS13AQ96RL7 AC104027.1-201ENST00000521887 300 ntBASIC2.59□□□□□ -2
VPS13AQ96RL7 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.59□□□□□ -2
VPS13AQ96RL7 AC022069.1-201ENST00000582910 658 ntBASIC2.59□□□□□ -2
VPS13AQ96RL7 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC2.59□□□□□ -2
VPS13AQ96RL7 AC007621.1-201ENST00000604544 437 ntBASIC2.59□□□□□ -2
VPS13AQ96RL7 AL359715.5-201ENST00000623431 443 ntBASIC2.59□□□□□ -2
VPS13AQ96RL7 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
VPS13AQ96RL7 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
VPS13AQ96RL7 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.58□□□□□ -2
VPS13AQ96RL7 SNORD114-1-201ENST00000362705 72 ntBASIC2.58□□□□□ -2
VPS13AQ96RL7 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC2.58□□□□□ -2
VPS13AQ96RL7 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.58□□□□□ -2
VPS13AQ96RL7 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.58□□□□□ -2
VPS13AQ96RL7 SCGB1D5P-201ENST00000515134 247 ntBASIC2.58□□□□□ -2
VPS13AQ96RL7 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC2.58□□□□□ -2
VPS13AQ96RL7 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
VPS13AQ96RL7 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
VPS13AQ96RL7 RNU6-55P-201ENST00000411092 107 ntBASIC2.58□□□□□ -2
VPS13AQ96RL7 RNU6-954P-201ENST00000411355 107 ntBASIC2.58□□□□□ -2
VPS13AQ96RL7 RPS20P5-201ENST00000434808 360 ntBASIC2.58□□□□□ -2
VPS13AQ96RL7 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC2.58□□□□□ -2
VPS13AQ96RL7 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC2.58□□□□□ -2
VPS13AQ96RL7 AC022882.1-201ENST00000532142 501 ntBASIC2.58□□□□□ -2
VPS13AQ96RL7 AC011602.1-201ENST00000546484 331 ntBASIC2.58□□□□□ -2
VPS13AQ96RL7 AC007424.1-203ENST00000554613 687 ntBASIC2.58□□□□□ -2
VPS13AQ96RL7 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.58□□□□□ -2
VPS13AQ96RL7 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC2.58□□□□□ -2
VPS13AQ96RL7 CUL1P1-201ENST00000509510 2425 ntBASIC2.58□□□□□ -2
VPS13AQ96RL7 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.58□□□□□ -2
VPS13AQ96RL7 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.58□□□□□ -2
VPS13AQ96RL7 AL356292.1-201ENST00000283110 373 ntBASIC2.57□□□□□ -2
VPS13AQ96RL7 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
VPS13AQ96RL7 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC2.57□□□□□ -2
VPS13AQ96RL7 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC2.57□□□□□ -2
VPS13AQ96RL7 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC2.57□□□□□ -2
VPS13AQ96RL7 CYCSP20-201ENST00000473154 315 ntBASIC2.57□□□□□ -2
VPS13AQ96RL7 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC2.57□□□□□ -2
VPS13AQ96RL7 OR5AK3P-201ENST00000527486 1297 ntBASIC2.57□□□□□ -2
VPS13AQ96RL7 AC009318.2-201ENST00000610917 651 ntBASIC2.57□□□□□ -2
VPS13AQ96RL7 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC2.57□□□□□ -2
VPS13AQ96RL7 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.57□□□□□ -2
VPS13AQ96RL7 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC2.57□□□□□ -2
VPS13AQ96RL7 RALGAPA1P1-201ENST00000443361 6232 ntBASIC2.57□□□□□ -2
VPS13AQ96RL7 ISCA1P2-201ENST00000438679 421 ntBASIC2.57□□□□□ -2
VPS13AQ96RL7 AL353705.4-201ENST00000449661 238 ntBASIC2.57□□□□□ -2
VPS13AQ96RL7 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC2.57□□□□□ -2
VPS13AQ96RL7 NRBF2P1-201ENST00000587407 859 ntBASIC2.57□□□□□ -2
VPS13AQ96RL7 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC2.57□□□□□ -2
VPS13AQ96RL7 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
VPS13AQ96RL7 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
VPS13AQ96RL7 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC2.57□□□□□ -2
VPS13AQ96RL7 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC2.57□□□□□ -2
VPS13AQ96RL7 SNORA70E-201ENST00000384492 135 ntBASIC2.57□□□□□ -2
VPS13AQ96RL7 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC2.57□□□□□ -2
VPS13AQ96RL7 ZNF603P-201ENST00000405613 487 ntBASIC2.57□□□□□ -2
VPS13AQ96RL7 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 131.2 ms