Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 RNU6-1231P-201ENST00000517185 103 ntBASIC3.48□□□□□ -1.85
HOXA9P31269 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.48□□□□□ -1.85
HOXA9P31269 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXA9P31269 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA9P31269 OR6C73P-201ENST00000546432 358 ntBASIC3.48□□□□□ -1.85
HOXA9P31269 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXA9P31269 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.48□□□□□ -1.85
HOXA9P31269 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXA9P31269 AC010928.3-201ENST00000587712 541 ntBASIC3.48□□□□□ -1.85
HOXA9P31269 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC3.48□□□□□ -1.85
HOXA9P31269 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXA9P31269 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXA9P31269 RMST_8.1-201ENST00000610287 165 ntBASIC3.48□□□□□ -1.85
HOXA9P31269 RNVU1-4-201ENST00000612985 164 ntBASIC3.48□□□□□ -1.85
HOXA9P31269 AL157817.1-201ENST00000614264 790 ntBASIC3.48□□□□□ -1.85
HOXA9P31269 MTND5P3-201ENST00000438536 1800 ntBASIC3.48□□□□□ -1.85
HOXA9P31269 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA9P31269 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA9P31269 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
HOXA9P31269 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HOXA9P31269 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
HOXA9P31269 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HOXA9P31269 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
HOXA9P31269 SNORD115-48-201ENST00000364764 76 ntBASIC3.47□□□□□ -1.85
HOXA9P31269 RNA5SP235-201ENST00000365411 114 ntBASIC3.47□□□□□ -1.85
HOXA9P31269 MIR591-201ENST00000385290 95 ntBASIC3.47□□□□□ -1.85
HOXA9P31269 RNU6-244P-201ENST00000391028 104 ntBASIC3.47□□□□□ -1.85
HOXA9P31269 U3.26-201ENST00000391236 204 ntBASIC3.47□□□□□ -1.85
HOXA9P31269 AL353705.1-201ENST00000433468 480 ntBASIC3.47□□□□□ -1.85
HOXA9P31269 AC008264.1-201ENST00000447612 367 ntBASIC3.47□□□□□ -1.85
HOXA9P31269 MRPS31P2-201ENST00000451581 518 ntBASIC3.47□□□□□ -1.85
HOXA9P31269 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HOXA9P31269 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXA9P31269 AC004801.2-202ENST00000463559 283 ntBASIC3.47□□□□□ -1.85
HOXA9P31269 RPS3AP50-201ENST00000487064 803 ntBASIC3.47□□□□□ -1.85
HOXA9P31269 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXA9P31269 AC006445.1-201ENST00000491925 405 ntBASIC3.47□□□□□ -1.85
HOXA9P31269 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXA9P31269 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HOXA9P31269 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXA9P31269 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXA9P31269 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXA9P31269 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXA9P31269 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXA9P31269 PDCL2P2-201ENST00000533651 189 ntBASIC3.47□□□□□ -1.85
HOXA9P31269 LINC00557-201ENST00000563184 1279 ntBASIC3.47□□□□□ -1.85
HOXA9P31269 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC3.47□□□□□ -1.85
HOXA9P31269 AC005242.1-201ENST00000585658 438 ntBASIC3.47□□□□□ -1.85
HOXA9P31269 BNIP3P38-201ENST00000601117 544 ntBASIC3.47□□□□□ -1.85
HOXA9P31269 AC004775.1-201ENST00000607389 753 ntBASIC3.47□□□□□ -1.85
HOXA9P31269 AC090425.2-201ENST00000608818 501 ntBASIC3.47□□□□□ -1.85
HOXA9P31269 AL162274.2-201ENST00000614406 332 ntBASIC3.47□□□□□ -1.85
HOXA9P31269 AP006248.3-201ENST00000623580 594 ntBASIC3.47□□□□□ -1.85
HOXA9P31269 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HOXA9P31269 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXA9P31269 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HOXA9P31269 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
HOXA9P31269 AC017071.1-201ENST00000564407 2204 ntBASIC3.47□□□□□ -1.85
HOXA9P31269 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HOXA9P31269 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
HOXA9P31269 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.46□□□□□ -1.85
HOXA9P31269 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
HOXA9P31269 AL021368.2-201ENST00000606125 5352 ntBASIC3.46□□□□□ -1.86
HOXA9P31269 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXA9P31269 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
HOXA9P31269 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.46□□□□□ -1.86
HOXA9P31269 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
HOXA9P31269 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
HOXA9P31269 MIR184-201ENST00000384962 84 ntBASIC3.46□□□□□ -1.86
HOXA9P31269 AL122016.1-201ENST00000403365 367 ntBASIC3.46□□□□□ -1.86
HOXA9P31269 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
HOXA9P31269 AC063979.1-201ENST00000415539 377 ntBASIC3.46□□□□□ -1.86
HOXA9P31269 LIPT1P1-201ENST00000415870 1186 ntBASIC3.46□□□□□ -1.86
HOXA9P31269 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXA9P31269 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXA9P31269 MTCYBP12-201ENST00000440559 1134 ntBASIC3.46□□□□□ -1.86
HOXA9P31269 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXA9P31269 NPM1P49-201ENST00000448027 714 ntBASIC3.46□□□□□ -1.86
HOXA9P31269 MTND2P8-201ENST00000450555 1025 ntBASIC3.46□□□□□ -1.86
HOXA9P31269 HMGB1P5-202ENST00000451497 985 ntBASIC3.46□□□□□ -1.86
HOXA9P31269 MTND2P6-201ENST00000455337 1030 ntBASIC3.46□□□□□ -1.86
HOXA9P31269 RPL7P48-201ENST00000461513 746 ntBASIC3.46□□□□□ -1.86
HOXA9P31269 AP001486.1-201ENST00000463339 476 ntBASIC3.46□□□□□ -1.86
HOXA9P31269 RPL37P6-202ENST00000464216 403 ntBASIC3.46□□□□□ -1.86
HOXA9P31269 CABYRP1-201ENST00000465493 1045 ntBASIC3.46□□□□□ -1.86
HOXA9P31269 AC108729.2-201ENST00000476543 840 ntBASIC3.46□□□□□ -1.86
HOXA9P31269 AL035404.1-201ENST00000497982 568 ntBASIC3.46□□□□□ -1.86
HOXA9P31269 RNA5SP341-201ENST00000516261 117 ntBASIC3.46□□□□□ -1.86
HOXA9P31269 RNU4-60P-201ENST00000517239 135 ntBASIC3.46□□□□□ -1.86
HOXA9P31269 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXA9P31269 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXA9P31269 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXA9P31269 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC3.46□□□□□ -1.86
HOXA9P31269 EIF4BP1-201ENST00000554881 351 ntBASIC3.46□□□□□ -1.86
HOXA9P31269 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXA9P31269 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXA9P31269 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXA9P31269 AC011468.4-201ENST00000603942 409 ntBASIC3.46□□□□□ -1.86
HOXA9P31269 AL365503.1-201ENST00000605247 905 ntBASIC3.46□□□□□ -1.86
HOXA9P31269 AC090525.3-201ENST00000605601 189 ntBASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms