Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RN7SL382P-201ENST00000482631 282 ntBASIC6.7□□□□□ -1.34
COL9A1P20849 AC005912.1-201ENST00000495392 255 ntBASIC6.7□□□□□ -1.34
COL9A1P20849 RPS4XP20-201ENST00000505751 772 ntBASIC6.7□□□□□ -1.34
COL9A1P20849 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC6.7□□□□□ -1.34
COL9A1P20849 Y_RNA.689-201ENST00000516589 107 ntBASIC6.7□□□□□ -1.34
COL9A1P20849 AP004607.2-201ENST00000533949 322 ntBASIC6.7□□□□□ -1.34
COL9A1P20849 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
COL9A1P20849 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC6.7□□□□□ -1.34
COL9A1P20849 AL078605.1-201ENST00000603529 500 ntBASIC6.7□□□□□ -1.34
COL9A1P20849 RPSAP73-201ENST00000614820 330 ntBASIC6.7□□□□□ -1.34
COL9A1P20849 AL590240.4-201ENST00000616908 390 ntBASIC6.7□□□□□ -1.34
COL9A1P20849 PFKM-232ENST00000629846 381 ntTSL 4 BASIC6.7□□□□□ -1.34
COL9A1P20849 CU633906.1-201ENST00000621924 2380 ntTSL 3 BASIC6.7□□□□□ -1.34
COL9A1P20849 TBX15-201ENST00000207157 3492 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
COL9A1P20849 AC105749.1-201ENST00000631338 2008 ntBASIC6.7□□□□□ -1.34
COL9A1P20849 RLIMP1-201ENST00000339626 1680 ntBASIC6.7□□□□□ -1.34
COL9A1P20849 LHX9-201ENST00000367387 7836 ntAPPRIS P3 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL9A1P20849 AC068870.1-201ENST00000563737 2455 ntBASIC6.7□□□□□ -1.34
COL9A1P20849 THRB-202ENST00000356447 6345 ntAPPRIS P2 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL9A1P20849 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL9A1P20849 OR2A5-202ENST00000641693 8681 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
COL9A1P20849 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL9A1P20849 ESRG-201ENST00000583516 3140 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
COL9A1P20849 OR2T2-203ENST00000642130 3331 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
COL9A1P20849 CLEC3A-201ENST00000299642 1971 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL9A1P20849 AL391262.1-201ENST00000556558 1992 ntBASIC6.69□□□□□ -1.34
COL9A1P20849 SIRPG-AS1-202ENST00000456177 2795 ntTSL 2 BASIC6.69□□□□□ -1.34
COL9A1P20849 TRIM5-202ENST00000380034 2991 ntAPPRIS P1 TSL 2 BASIC6.69□□□□□ -1.34
COL9A1P20849 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
COL9A1P20849 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL9A1P20849 ZDBF2-201ENST00000374423 10286 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL9A1P20849 LRRC37A4P-201ENST00000579913 3243 ntTSL 2 BASIC6.69□□□□□ -1.34
COL9A1P20849 CXCR6-204ENST00000458629 2805 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
COL9A1P20849 CABYR-216ENST00000621648 2226 ntAPPRIS P4 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL9A1P20849 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC6.69□□□□□ -1.34
COL9A1P20849 CNTNAP4-206ENST00000478060 3708 ntTSL 5 BASIC6.69□□□□□ -1.34
COL9A1P20849 CDK19-203ENST00000413605 6007 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
COL9A1P20849 TMEM72-AS1-201ENST00000450287 3300 ntTSL 2 BASIC6.69□□□□□ -1.34
COL9A1P20849 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC6.69□□□□□ -1.34
COL9A1P20849 BRCA1-221ENST00000493795 5732 ntTSL 5 BASIC6.69□□□□□ -1.34
COL9A1P20849 DIS3-201ENST00000377767 10604 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL9A1P20849 U3.42-201ENST00000408746 214 ntBASIC6.69□□□□□ -1.34
COL9A1P20849 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC6.69□□□□□ -1.34
COL9A1P20849 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC6.69□□□□□ -1.34
COL9A1P20849 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC6.69□□□□□ -1.34
COL9A1P20849 PPIAP7-201ENST00000454070 489 ntBASIC6.69□□□□□ -1.34
COL9A1P20849 ISCUP1-201ENST00000454451 448 ntBASIC6.69□□□□□ -1.34
COL9A1P20849 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
COL9A1P20849 CREM-230ENST00000474931 626 ntTSL 2 BASIC6.69□□□□□ -1.34
COL9A1P20849 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC6.69□□□□□ -1.34
COL9A1P20849 RN7SL466P-201ENST00000497546 295 ntBASIC6.69□□□□□ -1.34
COL9A1P20849 RNA5SP418-201ENST00000515951 117 ntBASIC6.69□□□□□ -1.34
COL9A1P20849 IGHVII-53-1-201ENST00000519538 255 ntBASIC6.69□□□□□ -1.34
COL9A1P20849 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC6.69□□□□□ -1.34
COL9A1P20849 AP000620.1-201ENST00000527147 504 ntBASIC6.69□□□□□ -1.34
COL9A1P20849 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC6.69□□□□□ -1.34
COL9A1P20849 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC6.69□□□□□ -1.34
COL9A1P20849 AC068790.4-201ENST00000602474 263 ntBASIC6.69□□□□□ -1.34
COL9A1P20849 AL158827.2-201ENST00000602494 330 ntBASIC6.69□□□□□ -1.34
COL9A1P20849 AC004805.3-201ENST00000603178 310 ntBASIC6.69□□□□□ -1.34
COL9A1P20849 SNORA74.4-201ENST00000607595 199 ntBASIC6.69□□□□□ -1.34
COL9A1P20849 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC6.69□□□□□ -1.34
COL9A1P20849 AC100827.5-201ENST00000615883 426 ntBASIC6.69□□□□□ -1.34
COL9A1P20849 AC110801.1-201ENST00000623590 212 ntBASIC6.69□□□□□ -1.34
COL9A1P20849 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC6.69□□□□□ -1.34
COL9A1P20849 AL691447.3-201ENST00000635020 330 ntBASIC6.69□□□□□ -1.34
COL9A1P20849 EIF3L-203ENST00000412331 3220 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
COL9A1P20849 MDM4-214ENST00000612738 9407 ntTSL 5 BASIC6.69□□□□□ -1.34
COL9A1P20849 NRXN3-207ENST00000554719 4156 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
COL9A1P20849 CLEC5A-206ENST00000546910 3511 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL9A1P20849 HAUS6P2-201ENST00000433254 2404 ntBASIC6.69□□□□□ -1.34
COL9A1P20849 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL9A1P20849 ARPP21-220ENST00000441454 2880 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
COL9A1P20849 SYNPO2-203ENST00000434046 3588 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
COL9A1P20849 CDHR3-201ENST00000317716 3813 ntAPPRIS P3 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL9A1P20849 FLJ42393-201ENST00000623801 2270 ntBASIC6.69□□□□□ -1.34
COL9A1P20849 CRB1-202ENST00000367399 3885 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
COL9A1P20849 MPP7-201ENST00000337532 5080 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
COL9A1P20849 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC6.69□□□□□ -1.34
COL9A1P20849 TENM4-201ENST00000278550 14000 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
COL9A1P20849 PHKB-201ENST00000299167 5464 ntTSL 5 BASIC6.68□□□□□ -1.34
COL9A1P20849 SALL4P7-201ENST00000555779 3120 ntBASIC6.68□□□□□ -1.34
COL9A1P20849 UNC79-202ENST00000393151 7908 ntTSL 5 BASIC6.68□□□□□ -1.34
COL9A1P20849 AC023421.1-201ENST00000590535 1785 ntBASIC6.68□□□□□ -1.34
COL9A1P20849 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL9A1P20849 VTRNA3-1P-201ENST00000362552 102 ntBASIC6.68□□□□□ -1.34
COL9A1P20849 CRP-202ENST00000368110 667 ntTSL 3 BASIC6.68□□□□□ -1.34
COL9A1P20849 Y_RNA.383-201ENST00000383855 97 ntBASIC6.68□□□□□ -1.34
COL9A1P20849 Y_RNA.398-201ENST00000383952 99 ntBASIC6.68□□□□□ -1.34
COL9A1P20849 Y_RNA.418-201ENST00000384029 102 ntBASIC6.68□□□□□ -1.34
COL9A1P20849 Y_RNA.533-201ENST00000384596 114 ntBASIC6.68□□□□□ -1.34
COL9A1P20849 RN7SKP271-201ENST00000410528 320 ntBASIC6.68□□□□□ -1.34
COL9A1P20849 RN7SKP27-201ENST00000410684 333 ntBASIC6.68□□□□□ -1.34
COL9A1P20849 AC017079.2-201ENST00000416102 485 ntBASIC6.68□□□□□ -1.34
COL9A1P20849 RPL21P50-201ENST00000417698 477 ntBASIC6.68□□□□□ -1.34
COL9A1P20849 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC6.68□□□□□ -1.34
COL9A1P20849 AC234781.4-201ENST00000419384 244 ntBASIC6.68□□□□□ -1.34
COL9A1P20849 RPS15AP6-201ENST00000420703 385 ntBASIC6.68□□□□□ -1.34
COL9A1P20849 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC6.68□□□□□ -1.34
COL9A1P20849 VTI1BP4-201ENST00000427516 527 ntBASIC6.68□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms