Protein–RNA interactions for Protein: Q9Y296

TRAPPC4, Trafficking protein particle complex subunit 4, humanhuman

Predictions only

Length 219 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4Q9Y296 AC023347.2-201ENST00000433994 462 ntBASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 FTH1P1-201ENST00000437933 532 ntBASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 AL096803.2-201ENST00000450032 677 ntBASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 DNAJC19P8-201ENST00000452887 259 ntBASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 AC073387.1-201ENST00000453261 709 ntBASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 MRPL35P4-201ENST00000453682 566 ntBASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 AC096992.1-201ENST00000459808 709 ntBASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 RN7SL542P-201ENST00000467147 294 ntBASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 AC108043.1-201ENST00000512696 574 ntBASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 RNU1-45P-201ENST00000517191 141 ntBASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 LY96-202ENST00000518893 430 ntTSL 3 BASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 TRMT10BP1-201ENST00000519377 943 ntBASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 AL109618.2-201ENST00000605527 211 ntBASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 RNA5SP108-201ENST00000605921 117 ntBASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 AC253576.2-201ENST00000618815 580 ntBASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 AC039056.2-201ENST00000622261 511 ntBASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 AP000943.4-201ENST00000622912 357 ntBASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 AC006065.5-201ENST00000623427 349 ntBASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 AC092608.3-201ENST00000625017 386 ntBASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 U6.98-201ENST00000637157 84 ntBASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 AC009093.8-201ENST00000641769 292 ntBASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 NMD3P1-201ENST00000439704 1488 ntBASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
TRAPPC4Q9Y296 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 AC046144.1-201ENST00000478559 1853 ntBASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 SNORD56.3-201ENST00000363507 71 ntBASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 U3.11-201ENST00000364476 212 ntBASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 RNU6-468P-201ENST00000384003 109 ntBASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 MIR134-201ENST00000385258 73 ntBASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 PTMAP2-201ENST00000397627 327 ntBASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 SNX10-203ENST00000409367 746 ntTSL 5 BASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 RNU2-37P-201ENST00000410695 177 ntBASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 AC009969.1-201ENST00000438726 172 ntBASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 HSFY3P-201ENST00000444242 1191 ntBASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 CDC27P1-201ENST00000445384 715 ntBASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 AC044797.1-201ENST00000445744 679 ntBASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 HMGN2P21-201ENST00000447764 270 ntBASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 SNRPGP3-201ENST00000469405 227 ntBASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 SETP14-201ENST00000497538 873 ntBASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 SAP18P1-201ENST00000512058 390 ntBASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 MTCO3P27-201ENST00000514397 196 ntBASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 AC023632.4-201ENST00000517783 191 ntBASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 AP004242.1-201ENST00000533701 349 ntBASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 AC069304.3-201ENST00000603938 1084 ntBASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 AC008759.3-201ENST00000613300 508 ntBASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 AC018926.3-201ENST00000618841 406 ntBASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 AC012442.3-202ENST00000636742 206 ntBASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 AC017104.5-201ENST00000637647 639 ntBASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 SRP72P2-201ENST00000344851 1979 ntBASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 AL133383.2-201ENST00000622958 2336 ntBASIC3.18□□□□□ -1.9
TRAPPC4Q9Y296 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
TRAPPC4Q9Y296 ZNF849P-201ENST00000594711 1566 ntBASIC3.17□□□□□ -1.9
TRAPPC4Q9Y296 AF127577.6-201ENST00000623352 2191 ntBASIC3.17□□□□□ -1.9
TRAPPC4Q9Y296 AL512646.1-201ENST00000269395 1077 ntBASIC3.17□□□□□ -1.9
TRAPPC4Q9Y296 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
TRAPPC4Q9Y296 RNA5SP124-201ENST00000362739 110 ntBASIC3.17□□□□□ -1.9
TRAPPC4Q9Y296 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
TRAPPC4Q9Y296 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
TRAPPC4Q9Y296 OR52E6-202ENST00000379946 954 ntBASIC3.17□□□□□ -1.9
TRAPPC4Q9Y296 SNORD65C-201ENST00000390962 71 ntBASIC3.17□□□□□ -1.9
TRAPPC4Q9Y296 RNU6-932P-201ENST00000391108 106 ntBASIC3.17□□□□□ -1.9
TRAPPC4Q9Y296 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
TRAPPC4Q9Y296 HNRNPDP2-201ENST00000406475 478 ntBASIC3.17□□□□□ -1.9
TRAPPC4Q9Y296 SNORA11C-201ENST00000408532 129 ntBASIC3.17□□□□□ -1.9
TRAPPC4Q9Y296 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms