Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.72□□□□□ -1.81
VPS39Q96JC1 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
VPS39Q96JC1 RPS4XP5-202ENST00000449995 1334 ntBASIC3.71□□□□□ -1.81
VPS39Q96JC1 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
VPS39Q96JC1 TNPO1P3-201ENST00000436471 2662 ntBASIC3.71□□□□□ -1.82
VPS39Q96JC1 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VPS39Q96JC1 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
VPS39Q96JC1 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VPS39Q96JC1 RN7SKP227-201ENST00000364445 330 ntBASIC3.71□□□□□ -1.82
VPS39Q96JC1 RNU6-283P-201ENST00000364788 107 ntBASIC3.71□□□□□ -1.82
VPS39Q96JC1 MTCO3P31-201ENST00000405526 789 ntBASIC3.71□□□□□ -1.82
VPS39Q96JC1 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS39Q96JC1 BX664727.1-201ENST00000416024 466 ntBASIC3.71□□□□□ -1.82
VPS39Q96JC1 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS39Q96JC1 AL606495.1-201ENST00000422100 813 ntBASIC3.71□□□□□ -1.82
VPS39Q96JC1 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS39Q96JC1 OR8F1P-201ENST00000425243 930 ntBASIC3.71□□□□□ -1.82
VPS39Q96JC1 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VPS39Q96JC1 AC004975.1-201ENST00000428733 208 ntBASIC3.71□□□□□ -1.82
VPS39Q96JC1 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS39Q96JC1 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS39Q96JC1 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS39Q96JC1 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS39Q96JC1 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS39Q96JC1 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS39Q96JC1 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS39Q96JC1 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS39Q96JC1 RPS4XP6-201ENST00000477670 797 ntBASIC3.71□□□□□ -1.82
VPS39Q96JC1 TPT1P3-201ENST00000492841 512 ntBASIC3.71□□□□□ -1.82
VPS39Q96JC1 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS39Q96JC1 NAMPTP2-201ENST00000505629 1115 ntBASIC3.71□□□□□ -1.82
VPS39Q96JC1 AC004062.1-201ENST00000509926 645 ntBASIC3.71□□□□□ -1.82
VPS39Q96JC1 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS39Q96JC1 RN7SKP13-201ENST00000515933 244 ntBASIC3.71□□□□□ -1.82
VPS39Q96JC1 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC3.71□□□□□ -1.82
VPS39Q96JC1 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VPS39Q96JC1 AL121603.1-201ENST00000553815 142 ntBASIC3.71□□□□□ -1.82
VPS39Q96JC1 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.71□□□□□ -1.82
VPS39Q96JC1 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS39Q96JC1 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS39Q96JC1 MIR4474-201ENST00000579189 78 ntBASIC3.71□□□□□ -1.82
VPS39Q96JC1 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS39Q96JC1 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VPS39Q96JC1 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VPS39Q96JC1 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS39Q96JC1 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VPS39Q96JC1 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VPS39Q96JC1 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.71□□□□□ -1.82
VPS39Q96JC1 AC092650.2-201ENST00000619984 902 ntBASIC3.71□□□□□ -1.82
VPS39Q96JC1 AC098679.5-201ENST00000624394 571 ntBASIC3.71□□□□□ -1.82
VPS39Q96JC1 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS39Q96JC1 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VPS39Q96JC1 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VPS39Q96JC1 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS39Q96JC1 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS39Q96JC1 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.71□□□□□ -1.82
VPS39Q96JC1 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
VPS39Q96JC1 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VPS39Q96JC1 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS39Q96JC1 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.7□□□□□ -1.82
VPS39Q96JC1 AC073073.2-201ENST00000609827 2578 ntBASIC3.7□□□□□ -1.82
VPS39Q96JC1 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS39Q96JC1 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
VPS39Q96JC1 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VPS39Q96JC1 MIR372-201ENST00000362225 67 ntBASIC3.7□□□□□ -1.82
VPS39Q96JC1 SNORA63.3-201ENST00000362682 132 ntBASIC3.7□□□□□ -1.82
VPS39Q96JC1 RNU6-609P-201ENST00000365459 107 ntBASIC3.7□□□□□ -1.82
VPS39Q96JC1 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS39Q96JC1 RNU6-628P-201ENST00000410675 107 ntBASIC3.7□□□□□ -1.82
VPS39Q96JC1 RPS7P15-201ENST00000415804 584 ntBASIC3.7□□□□□ -1.82
VPS39Q96JC1 AC009237.2-201ENST00000421358 284 ntBASIC3.7□□□□□ -1.82
VPS39Q96JC1 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS39Q96JC1 AC002075.2-201ENST00000425207 252 ntBASIC3.7□□□□□ -1.82
VPS39Q96JC1 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS39Q96JC1 AC006989.1-201ENST00000427212 131 ntBASIC3.7□□□□□ -1.82
VPS39Q96JC1 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC3.7□□□□□ -1.82
VPS39Q96JC1 AC091390.1-201ENST00000433904 331 ntBASIC3.7□□□□□ -1.82
VPS39Q96JC1 HMGN2P20-201ENST00000437531 273 ntBASIC3.7□□□□□ -1.82
VPS39Q96JC1 RPL21P89-201ENST00000444021 467 ntBASIC3.7□□□□□ -1.82
VPS39Q96JC1 AC104073.1-201ENST00000451988 151 ntBASIC3.7□□□□□ -1.82
VPS39Q96JC1 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VPS39Q96JC1 snoU13.4-201ENST00000458916 104 ntBASIC3.7□□□□□ -1.82
VPS39Q96JC1 PRDX3P4-201ENST00000470828 747 ntBASIC3.7□□□□□ -1.82
VPS39Q96JC1 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC3.7□□□□□ -1.82
VPS39Q96JC1 RN7SL323P-201ENST00000494712 295 ntBASIC3.7□□□□□ -1.82
VPS39Q96JC1 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VPS39Q96JC1 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VPS39Q96JC1 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC3.7□□□□□ -1.82
VPS39Q96JC1 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VPS39Q96JC1 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VPS39Q96JC1 HMGN1P15-201ENST00000513870 295 ntBASIC3.7□□□□□ -1.82
VPS39Q96JC1 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VPS39Q96JC1 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.7□□□□□ -1.82
VPS39Q96JC1 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC3.7□□□□□ -1.82
VPS39Q96JC1 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS39Q96JC1 OR7E13P-201ENST00000526052 910 ntBASIC3.7□□□□□ -1.82
VPS39Q96JC1 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS39Q96JC1 OR5AP1P-201ENST00000529730 940 ntBASIC3.7□□□□□ -1.82
VPS39Q96JC1 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.7□□□□□ -1.82
VPS39Q96JC1 AC008011.1-201ENST00000545989 227 ntBASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms