Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC2.23□□□□□ -2.05
VPS13CQ709C8 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC2.23□□□□□ -2.05
VPS13CQ709C8 YPEL5P1-201ENST00000419731 367 ntBASIC2.23□□□□□ -2.05
VPS13CQ709C8 HSPE1P16-201ENST00000426640 348 ntBASIC2.23□□□□□ -2.05
VPS13CQ709C8 BX679664.1-201ENST00000434429 253 ntBASIC2.23□□□□□ -2.05
VPS13CQ709C8 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
VPS13CQ709C8 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC2.23□□□□□ -2.05
VPS13CQ709C8 OR9N1P-201ENST00000491296 333 ntBASIC2.23□□□□□ -2.05
VPS13CQ709C8 ERP27-202ENST00000540097 993 ntTSL 2 BASIC2.23□□□□□ -2.05
VPS13CQ709C8 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.23□□□□□ -2.05
VPS13CQ709C8 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.23□□□□□ -2.05
VPS13CQ709C8 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
VPS13CQ709C8 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
VPS13CQ709C8 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC2.22□□□□□ -2.05
VPS13CQ709C8 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
VPS13CQ709C8 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC2.22□□□□□ -2.05
VPS13CQ709C8 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC2.22□□□□□ -2.05
VPS13CQ709C8 MIR592-201ENST00000384959 97 ntBASIC2.22□□□□□ -2.05
VPS13CQ709C8 RNU6-55P-201ENST00000411092 107 ntBASIC2.22□□□□□ -2.05
VPS13CQ709C8 RNU6-954P-201ENST00000411355 107 ntBASIC2.22□□□□□ -2.05
VPS13CQ709C8 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC2.22□□□□□ -2.05
VPS13CQ709C8 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC2.22□□□□□ -2.05
VPS13CQ709C8 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC2.22□□□□□ -2.05
VPS13CQ709C8 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC2.22□□□□□ -2.05
VPS13CQ709C8 FTH1P11-201ENST00000517577 551 ntBASIC2.22□□□□□ -2.05
VPS13CQ709C8 AC123768.4-201ENST00000616244 701 ntBASIC2.22□□□□□ -2.05
VPS13CQ709C8 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC2.22□□□□□ -2.05
VPS13CQ709C8 AL596275.2-204ENST00000641628 552 ntBASIC2.22□□□□□ -2.05
VPS13CQ709C8 AL596275.2-206ENST00000641957 626 ntBASIC2.22□□□□□ -2.05
VPS13CQ709C8 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.22□□□□□ -2.05
VPS13CQ709C8 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC2.22□□□□□ -2.05
VPS13CQ709C8 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
VPS13CQ709C8 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC2.22□□□□□ -2.05
VPS13CQ709C8 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC2.22□□□□□ -2.05
VPS13CQ709C8 AC012020.1-201ENST00000624541 1728 ntBASIC2.22□□□□□ -2.05
VPS13CQ709C8 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
VPS13CQ709C8 U3.11-201ENST00000364476 212 ntBASIC2.22□□□□□ -2.05
VPS13CQ709C8 RPL23AP4-201ENST00000427757 463 ntBASIC2.22□□□□□ -2.05
VPS13CQ709C8 AC011242.1-201ENST00000433596 1158 ntBASIC2.22□□□□□ -2.05
VPS13CQ709C8 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC2.22□□□□□ -2.05
VPS13CQ709C8 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.22□□□□□ -2.05
VPS13CQ709C8 AC146507.2-201ENST00000460608 476 ntBASIC2.22□□□□□ -2.05
VPS13CQ709C8 RPL9P6-201ENST00000492764 598 ntBASIC2.22□□□□□ -2.05
VPS13CQ709C8 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.22□□□□□ -2.05
VPS13CQ709C8 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC2.22□□□□□ -2.05
VPS13CQ709C8 ARL2BPP6-201ENST00000512757 439 ntBASIC2.22□□□□□ -2.05
VPS13CQ709C8 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.22□□□□□ -2.05
VPS13CQ709C8 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC2.22□□□□□ -2.05
VPS13CQ709C8 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC2.22□□□□□ -2.05
VPS13CQ709C8 AC092079.1-201ENST00000558620 1985 ntBASIC2.22□□□□□ -2.05
VPS13CQ709C8 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
VPS13CQ709C8 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC2.22□□□□□ -2.05
VPS13CQ709C8 AL121834.1-202ENST00000404494 277 ntBASIC2.22□□□□□ -2.05
VPS13CQ709C8 RNA5SP425-201ENST00000410336 112 ntBASIC2.22□□□□□ -2.05
VPS13CQ709C8 MTCYBP14-201ENST00000457471 715 ntBASIC2.22□□□□□ -2.05
VPS13CQ709C8 HMGB1P25-201ENST00000468402 607 ntBASIC2.22□□□□□ -2.05
VPS13CQ709C8 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.22□□□□□ -2.05
VPS13CQ709C8 MIR8070-201ENST00000616510 88 ntBASIC2.22□□□□□ -2.05
VPS13CQ709C8 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC2.21□□□□□ -2.05
VPS13CQ709C8 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
VPS13CQ709C8 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC2.21□□□□□ -2.06
VPS13CQ709C8 HMGB3P11-201ENST00000440127 604 ntBASIC2.21□□□□□ -2.06
VPS13CQ709C8 AC011816.1-201ENST00000441346 546 ntBASIC2.21□□□□□ -2.06
VPS13CQ709C8 Z99127.2-201ENST00000441426 334 ntBASIC2.21□□□□□ -2.06
VPS13CQ709C8 AC091179.1-201ENST00000461606 579 ntBASIC2.21□□□□□ -2.06
VPS13CQ709C8 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC2.21□□□□□ -2.06
VPS13CQ709C8 AP000867.2-201ENST00000532468 320 ntBASIC2.21□□□□□ -2.06
VPS13CQ709C8 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC2.21□□□□□ -2.06
VPS13CQ709C8 OR4G1P-202ENST00000641173 1788 ntBASIC2.21□□□□□ -2.06
VPS13CQ709C8 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC2.21□□□□□ -2.06
VPS13CQ709C8 FAM35BP-202ENST00000497389 3337 ntBASIC2.21□□□□□ -2.06
VPS13CQ709C8 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC2.21□□□□□ -2.06
VPS13CQ709C8 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
VPS13CQ709C8 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC2.21□□□□□ -2.06
VPS13CQ709C8 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.21□□□□□ -2.06
VPS13CQ709C8 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC2.21□□□□□ -2.06
VPS13CQ709C8 RPL23AP70-201ENST00000483361 460 ntBASIC2.21□□□□□ -2.06
VPS13CQ709C8 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.21□□□□□ -2.06
VPS13CQ709C8 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC2.21□□□□□ -2.06
VPS13CQ709C8 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.21□□□□□ -2.06
VPS13CQ709C8 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC2.21□□□□□ -2.06
VPS13CQ709C8 SNORA31.1-201ENST00000515993 133 ntBASIC2.21□□□□□ -2.06
VPS13CQ709C8 SNORA31.5-201ENST00000516190 133 ntBASIC2.21□□□□□ -2.06
VPS13CQ709C8 RN7SKP82-201ENST00000516786 223 ntBASIC2.21□□□□□ -2.06
VPS13CQ709C8 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC2.21□□□□□ -2.06
VPS13CQ709C8 AC011602.1-201ENST00000546484 331 ntBASIC2.21□□□□□ -2.06
VPS13CQ709C8 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC2.21□□□□□ -2.06
VPS13CQ709C8 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC2.21□□□□□ -2.06
VPS13CQ709C8 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC2.21□□□□□ -2.06
VPS13CQ709C8 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC2.21□□□□□ -2.06
VPS13CQ709C8 ZNF72P-201ENST00000425869 1908 ntBASIC2.21□□□□□ -2.06
VPS13CQ709C8 RPS12P23-201ENST00000419579 400 ntBASIC2.21□□□□□ -2.06
VPS13CQ709C8 DPH3P2-201ENST00000422618 250 ntBASIC2.21□□□□□ -2.06
VPS13CQ709C8 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.21□□□□□ -2.06
VPS13CQ709C8 RPL29P29-201ENST00000448725 423 ntBASIC2.21□□□□□ -2.06
VPS13CQ709C8 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC2.21□□□□□ -2.06
VPS13CQ709C8 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.21□□□□□ -2.06
VPS13CQ709C8 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC2.21□□□□□ -2.06
VPS13CQ709C8 AL356489.2-201ENST00000566968 3528 ntBASIC2.21□□□□□ -2.06
VPS13CQ709C8 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms