Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC4.99□□□□□ -1.61
USP39Q53GS9 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC4.99□□□□□ -1.61
USP39Q53GS9 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC4.99□□□□□ -1.61
USP39Q53GS9 ATP5J2P6-201ENST00000565203 266 ntBASIC4.99□□□□□ -1.61
USP39Q53GS9 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC4.99□□□□□ -1.61
USP39Q53GS9 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC4.99□□□□□ -1.61
USP39Q53GS9 AL391840.1-201ENST00000571144 367 ntBASIC4.99□□□□□ -1.61
USP39Q53GS9 AC136624.4-201ENST00000573044 370 ntBASIC4.99□□□□□ -1.61
USP39Q53GS9 KPNA2P3-201ENST00000584190 848 ntBASIC4.99□□□□□ -1.61
USP39Q53GS9 AC009233.1-201ENST00000616477 371 ntBASIC4.99□□□□□ -1.61
USP39Q53GS9 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC4.99□□□□□ -1.61
USP39Q53GS9 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.99□□□□□ -1.61
USP39Q53GS9 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
USP39Q53GS9 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC4.99□□□□□ -1.61
USP39Q53GS9 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
USP39Q53GS9 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
USP39Q53GS9 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
USP39Q53GS9 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.99□□□□□ -1.61
USP39Q53GS9 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.99□□□□□ -1.61
USP39Q53GS9 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
USP39Q53GS9 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
USP39Q53GS9 AL022578.1-201ENST00000439330 1433 ntBASIC4.98□□□□□ -1.61
USP39Q53GS9 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.98□□□□□ -1.61
USP39Q53GS9 AC117529.2-201ENST00000512159 2068 ntBASIC4.98□□□□□ -1.61
USP39Q53GS9 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
USP39Q53GS9 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
USP39Q53GS9 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.98□□□□□ -1.61
USP39Q53GS9 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
USP39Q53GS9 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
USP39Q53GS9 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC4.98□□□□□ -1.61
USP39Q53GS9 AC009313.2-201ENST00000417893 1941 ntBASIC4.98□□□□□ -1.61
USP39Q53GS9 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.98□□□□□ -1.61
USP39Q53GS9 Y_RNA.162-201ENST00000363683 102 ntBASIC4.98□□□□□ -1.61
USP39Q53GS9 RNU5E-5P-201ENST00000365379 116 ntBASIC4.98□□□□□ -1.61
USP39Q53GS9 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC4.98□□□□□ -1.61
USP39Q53GS9 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
USP39Q53GS9 RNU6-225P-201ENST00000384613 103 ntBASIC4.98□□□□□ -1.61
USP39Q53GS9 AL161909.1-201ENST00000397390 712 ntBASIC4.98□□□□□ -1.61
USP39Q53GS9 AL034374.1-201ENST00000406329 351 ntBASIC4.98□□□□□ -1.61
USP39Q53GS9 MIR1284-201ENST00000408337 120 ntBASIC4.98□□□□□ -1.61
USP39Q53GS9 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC4.98□□□□□ -1.61
USP39Q53GS9 AF228730.4-201ENST00000421457 183 ntBASIC4.98□□□□□ -1.61
USP39Q53GS9 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
USP39Q53GS9 AL009174.1-201ENST00000426577 416 ntBASIC4.98□□□□□ -1.61
USP39Q53GS9 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC4.98□□□□□ -1.61
USP39Q53GS9 TIMM9P3-201ENST00000428659 274 ntBASIC4.98□□□□□ -1.61
USP39Q53GS9 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC4.98□□□□□ -1.61
USP39Q53GS9 AC093414.1-201ENST00000434712 514 ntBASIC4.98□□□□□ -1.61
USP39Q53GS9 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC4.98□□□□□ -1.61
USP39Q53GS9 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC4.98□□□□□ -1.61
USP39Q53GS9 RPL36AP15-201ENST00000444514 266 ntBASIC4.98□□□□□ -1.61
USP39Q53GS9 MTND4P19-201ENST00000446659 478 ntBASIC4.98□□□□□ -1.61
USP39Q53GS9 AC004980.3-201ENST00000447046 365 ntBASIC4.98□□□□□ -1.61
USP39Q53GS9 EIF4A1P11-201ENST00000451239 222 ntBASIC4.98□□□□□ -1.61
USP39Q53GS9 OFD1P4Y-201ENST00000455273 1179 ntBASIC4.98□□□□□ -1.61
USP39Q53GS9 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.98□□□□□ -1.61
USP39Q53GS9 AHI1-208ENST00000488690 712 ntTSL 5 BASIC4.98□□□□□ -1.61
USP39Q53GS9 AC026979.1-201ENST00000492525 396 ntBASIC4.98□□□□□ -1.61
USP39Q53GS9 NIPA2P2-201ENST00000496376 1083 ntBASIC4.98□□□□□ -1.61
USP39Q53GS9 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC4.98□□□□□ -1.61
USP39Q53GS9 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC4.98□□□□□ -1.61
USP39Q53GS9 AC114786.4-201ENST00000508771 728 ntBASIC4.98□□□□□ -1.61
USP39Q53GS9 MTCYBP43-201ENST00000513621 740 ntBASIC4.98□□□□□ -1.61
USP39Q53GS9 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC4.98□□□□□ -1.61
USP39Q53GS9 TBCA-203ENST00000517679 545 ntTSL 3 BASIC4.98□□□□□ -1.61
USP39Q53GS9 MTCO2P4-201ENST00000517968 247 ntBASIC4.98□□□□□ -1.61
USP39Q53GS9 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC4.98□□□□□ -1.61
USP39Q53GS9 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC4.98□□□□□ -1.61
USP39Q53GS9 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC4.98□□□□□ -1.61
USP39Q53GS9 HMGB1P33-201ENST00000563485 527 ntBASIC4.98□□□□□ -1.61
USP39Q53GS9 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC4.98□□□□□ -1.61
USP39Q53GS9 USP12-203ENST00000620323 349 ntTSL 3 BASIC4.98□□□□□ -1.61
USP39Q53GS9 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC4.98□□□□□ -1.61
USP39Q53GS9 CRYM-AS1-204ENST00000637983 556 ntBASIC4.98□□□□□ -1.61
USP39Q53GS9 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
USP39Q53GS9 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC4.98□□□□□ -1.61
USP39Q53GS9 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.98□□□□□ -1.61
USP39Q53GS9 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
USP39Q53GS9 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
USP39Q53GS9 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
USP39Q53GS9 AC021242.1-201ENST00000507315 2035 ntBASIC4.97□□□□□ -1.61
USP39Q53GS9 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.97□□□□□ -1.61
USP39Q53GS9 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.97□□□□□ -1.61
USP39Q53GS9 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
USP39Q53GS9 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
USP39Q53GS9 MED23-203ENST00000368058 4576 ntTSL 5 BASIC4.97□□□□□ -1.61
USP39Q53GS9 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
USP39Q53GS9 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.97□□□□□ -1.61
USP39Q53GS9 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
USP39Q53GS9 RNU6-1339P-201ENST00000363574 91 ntBASIC4.97□□□□□ -1.61
USP39Q53GS9 Y_RNA.529-201ENST00000384586 119 ntBASIC4.97□□□□□ -1.61
USP39Q53GS9 MIR16-1-201ENST00000385271 89 ntBASIC4.97□□□□□ -1.61
USP39Q53GS9 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
USP39Q53GS9 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC4.97□□□□□ -1.61
USP39Q53GS9 AL356776.1-201ENST00000406574 447 ntBASIC4.97□□□□□ -1.61
USP39Q53GS9 SNORA77-201ENST00000408716 125 ntBASIC4.97□□□□□ -1.61
USP39Q53GS9 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC4.97□□□□□ -1.61
USP39Q53GS9 AC104333.2-201ENST00000422630 192 ntBASIC4.97□□□□□ -1.61
USP39Q53GS9 AC005154.2-201ENST00000438110 379 ntBASIC4.97□□□□□ -1.61
USP39Q53GS9 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms