Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 IGLVIV-65-201ENST00000517313 360 ntBASIC5.05□□□□□ -1.6
SMARCA1P28370 OR5BC1P-201ENST00000529327 739 ntBASIC5.05□□□□□ -1.6
SMARCA1P28370 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC5.05□□□□□ -1.6
SMARCA1P28370 TRAV8-5-201ENST00000537369 341 ntBASIC5.05□□□□□ -1.6
SMARCA1P28370 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SMARCA1P28370 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC5.05□□□□□ -1.6
SMARCA1P28370 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC5.05□□□□□ -1.6
SMARCA1P28370 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC5.05□□□□□ -1.6
SMARCA1P28370 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SMARCA1P28370 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC5.05□□□□□ -1.6
SMARCA1P28370 KPNA2P3-201ENST00000584190 848 ntBASIC5.05□□□□□ -1.6
SMARCA1P28370 SLC25A36P1-201ENST00000590111 465 ntBASIC5.05□□□□□ -1.6
SMARCA1P28370 MIR378J-201ENST00000611988 109 ntBASIC5.05□□□□□ -1.6
SMARCA1P28370 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
SMARCA1P28370 MIR7844-201ENST00000616161 122 ntBASIC5.05□□□□□ -1.6
SMARCA1P28370 AL356266.1-201ENST00000623311 483 ntBASIC5.05□□□□□ -1.6
SMARCA1P28370 AC092656.1-203ENST00000624134 423 ntBASIC5.05□□□□□ -1.6
SMARCA1P28370 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
SMARCA1P28370 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC5.05□□□□□ -1.6
SMARCA1P28370 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SMARCA1P28370 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SMARCA1P28370 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC5.04□□□□□ -1.6
SMARCA1P28370 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC5.04□□□□□ -1.6
SMARCA1P28370 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SMARCA1P28370 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
SMARCA1P28370 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC5.04□□□□□ -1.6
SMARCA1P28370 AC126755.2-208ENST00000327792 462 ntBASIC5.04□□□□□ -1.6
SMARCA1P28370 RPL21P132-201ENST00000331267 462 ntBASIC5.04□□□□□ -1.6
SMARCA1P28370 AC138969.1-213ENST00000331436 462 ntBASIC5.04□□□□□ -1.6
SMARCA1P28370 SNRPEP3-201ENST00000338402 276 ntBASIC5.04□□□□□ -1.6
SMARCA1P28370 RNU6-433P-201ENST00000363216 104 ntBASIC5.04□□□□□ -1.6
SMARCA1P28370 RNA5SP175-201ENST00000364275 119 ntBASIC5.04□□□□□ -1.6
SMARCA1P28370 AC136624.1-201ENST00000400791 413 ntBASIC5.04□□□□□ -1.6
SMARCA1P28370 RNU4-25P-201ENST00000410569 230 ntBASIC5.04□□□□□ -1.6
SMARCA1P28370 RPS20P14-201ENST00000412545 360 ntBASIC5.04□□□□□ -1.6
SMARCA1P28370 EIF1P3-201ENST00000423841 334 ntBASIC5.04□□□□□ -1.6
SMARCA1P28370 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SMARCA1P28370 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC5.04□□□□□ -1.6
SMARCA1P28370 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC5.04□□□□□ -1.6
SMARCA1P28370 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC5.04□□□□□ -1.6
SMARCA1P28370 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC5.04□□□□□ -1.6
SMARCA1P28370 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC5.04□□□□□ -1.6
SMARCA1P28370 RPL36AP33-201ENST00000450395 310 ntBASIC5.04□□□□□ -1.6
SMARCA1P28370 RPL26P28-201ENST00000451325 435 ntBASIC5.04□□□□□ -1.6
SMARCA1P28370 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC5.04□□□□□ -1.6
SMARCA1P28370 RPL30P9-201ENST00000465586 330 ntBASIC5.04□□□□□ -1.6
SMARCA1P28370 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC5.04□□□□□ -1.6
SMARCA1P28370 AC008802.1-201ENST00000519121 791 ntBASIC5.04□□□□□ -1.6
SMARCA1P28370 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC5.04□□□□□ -1.6
SMARCA1P28370 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC5.04□□□□□ -1.6
SMARCA1P28370 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC5.04□□□□□ -1.6
SMARCA1P28370 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC5.04□□□□□ -1.6
SMARCA1P28370 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC5.04□□□□□ -1.6
SMARCA1P28370 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC5.04□□□□□ -1.6
SMARCA1P28370 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC5.04□□□□□ -1.6
SMARCA1P28370 AC006362.1-201ENST00000567392 174 ntBASIC5.04□□□□□ -1.6
SMARCA1P28370 AGGF1P4-201ENST00000568249 801 ntBASIC5.04□□□□□ -1.6
SMARCA1P28370 RN7SL176P-201ENST00000580352 264 ntBASIC5.04□□□□□ -1.6
SMARCA1P28370 ELOCP28-201ENST00000590044 317 ntBASIC5.04□□□□□ -1.6
SMARCA1P28370 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC5.04□□□□□ -1.6
SMARCA1P28370 AL160290.3-201ENST00000604869 165 ntBASIC5.04□□□□□ -1.6
SMARCA1P28370 AC092354.1-201ENST00000606057 376 ntBASIC5.04□□□□□ -1.6
SMARCA1P28370 Z98200.1-201ENST00000607298 470 ntBASIC5.04□□□□□ -1.6
SMARCA1P28370 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC5.04□□□□□ -1.6
SMARCA1P28370 AC009878.1-201ENST00000621819 340 ntBASIC5.04□□□□□ -1.6
SMARCA1P28370 AC079228.1-201ENST00000624774 1049 ntBASIC5.04□□□□□ -1.6
SMARCA1P28370 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC5.04□□□□□ -1.6
SMARCA1P28370 NRK-204ENST00000540278 1687 ntTSL 2 BASIC5.04□□□□□ -1.6
SMARCA1P28370 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SMARCA1P28370 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
SMARCA1P28370 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
SMARCA1P28370 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
SMARCA1P28370 AC107081.3-201ENST00000612715 2034 ntBASIC5.04□□□□□ -1.6
SMARCA1P28370 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
SMARCA1P28370 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SMARCA1P28370 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SMARCA1P28370 ERCC6-202ENST00000374127 1782 ntBASIC5.04□□□□□ -1.6
SMARCA1P28370 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC5.03□□□□□ -1.6
SMARCA1P28370 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SMARCA1P28370 AL672167.1-205ENST00000641112 3080 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 ATP8A2P3-201ENST00000426792 1536 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SMARCA1P28370 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SMARCA1P28370 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SMARCA1P28370 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SMARCA1P28370 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC5.03□□□□□ -1.6
SMARCA1P28370 RNU1-94P-201ENST00000362627 173 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 RNA5SP366-201ENST00000365454 123 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 SNORA62-201ENST00000365493 153 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 RNA5SP88-201ENST00000365560 109 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 RNU6-1293P-201ENST00000384077 107 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 RNU6-1122P-201ENST00000384449 107 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 Y_RNA.559-201ENST00000384686 107 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 AC007066.1-201ENST00000392902 381 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SMARCA1P28370 RN7SKP167-201ENST00000411047 285 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 RAB28P1-201ENST00000411517 641 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 OFD1P11Y-201ENST00000418213 1177 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC5.03□□□□□ -1.6
SMARCA1P28370 AL157831.1-201ENST00000426134 473 ntBASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 113.1 ms