Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AL049555.1-201ENST00000562834 1933 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 AL592114.1-201ENST00000403842 483 ntBASIC4.69□□□□□ -1.66
CCDC140Q96MF4 GCNT1P4-201ENST00000404096 329 ntBASIC4.69□□□□□ -1.66
CCDC140Q96MF4 NDUFS5P1-201ENST00000405668 289 ntBASIC4.69□□□□□ -1.66
CCDC140Q96MF4 AL583834.1-201ENST00000406943 343 ntBASIC4.69□□□□□ -1.66
CCDC140Q96MF4 RNU2-43P-201ENST00000410306 190 ntBASIC4.69□□□□□ -1.66
CCDC140Q96MF4 RNU4-46P-201ENST00000410818 138 ntBASIC4.69□□□□□ -1.66
CCDC140Q96MF4 HSD17B7P1-201ENST00000412419 1017 ntBASIC4.69□□□□□ -1.66
CCDC140Q96MF4 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 PLA2G12AP2-201ENST00000424744 264 ntBASIC4.69□□□□□ -1.66
CCDC140Q96MF4 FTLP8-201ENST00000446770 267 ntBASIC4.69□□□□□ -1.66
CCDC140Q96MF4 SCARNA18-201ENST00000459004 134 ntBASIC4.69□□□□□ -1.66
CCDC140Q96MF4 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 AC124945.1-201ENST00000485133 188 ntBASIC4.69□□□□□ -1.66
CCDC140Q96MF4 Y_RNA.654-201ENST00000497848 106 ntBASIC4.69□□□□□ -1.66
CCDC140Q96MF4 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 RNU6-123P-201ENST00000516163 102 ntBASIC4.69□□□□□ -1.66
CCDC140Q96MF4 RN7SKP70-201ENST00000516655 271 ntBASIC4.69□□□□□ -1.66
CCDC140Q96MF4 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 FAU-203ENST00000525297 355 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 MIR3154-201ENST00000577829 84 ntBASIC4.69□□□□□ -1.66
CCDC140Q96MF4 MIR4271-201ENST00000582451 67 ntBASIC4.69□□□□□ -1.66
CCDC140Q96MF4 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 AC119403.2-201ENST00000590960 598 ntBASIC4.69□□□□□ -1.66
CCDC140Q96MF4 APOC2-205ENST00000592257 444 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 BNIP3P22-201ENST00000593399 556 ntBASIC4.69□□□□□ -1.66
CCDC140Q96MF4 AC092747.3-201ENST00000603769 301 ntBASIC4.69□□□□□ -1.66
CCDC140Q96MF4 AL592436.1-201ENST00000605135 558 ntBASIC4.69□□□□□ -1.66
CCDC140Q96MF4 AC096861.1-201ENST00000616652 240 ntBASIC4.69□□□□□ -1.66
CCDC140Q96MF4 CCL14-204ENST00000622526 472 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC140Q96MF4 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 RBMY1HP-201ENST00000382759 1389 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 MTND5P3-201ENST00000438536 1800 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 RNU1-59P-201ENST00000364829 162 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 SNORA77.2-201ENST00000408571 112 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 MIR1275-201ENST00000408770 80 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 RNU6-1304P-201ENST00000411374 106 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 EIF4A1P3-201ENST00000411521 244 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 USP9YP20-201ENST00000419224 558 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 AC090774.1-201ENST00000435925 246 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 AC005019.1-201ENST00000436455 431 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 RPL5P7-201ENST00000444235 813 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms