Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.62□□□□□ -1.83
SCN4AP35499 SNORD116-30-201ENST00000516468 85 ntBASIC3.62□□□□□ -1.83
SCN4AP35499 MTCYBP19-201ENST00000517463 1124 ntBASIC3.62□□□□□ -1.83
SCN4AP35499 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.62□□□□□ -1.83
SCN4AP35499 MIR4738-201ENST00000579134 87 ntBASIC3.62□□□□□ -1.83
SCN4AP35499 AC138761.3-201ENST00000579993 334 ntBASIC3.62□□□□□ -1.83
SCN4AP35499 AC015871.2-201ENST00000603605 948 ntBASIC3.62□□□□□ -1.83
SCN4AP35499 AL365503.1-201ENST00000605247 905 ntBASIC3.62□□□□□ -1.83
SCN4AP35499 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.62□□□□□ -1.83
SCN4AP35499 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
SCN4AP35499 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.62□□□□□ -1.83
SCN4AP35499 AC095050.2-201ENST00000510748 1458 ntBASIC3.62□□□□□ -1.83
SCN4AP35499 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SCN4AP35499 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.62□□□□□ -1.83
SCN4AP35499 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.62□□□□□ -1.83
SCN4AP35499 RNU6-984P-201ENST00000363236 109 ntBASIC3.61□□□□□ -1.83
SCN4AP35499 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
SCN4AP35499 SNORA67.4-201ENST00000384688 142 ntBASIC3.61□□□□□ -1.83
SCN4AP35499 MIR504-201ENST00000385065 83 ntBASIC3.61□□□□□ -1.83
SCN4AP35499 RN7SKP285-201ENST00000410137 318 ntBASIC3.61□□□□□ -1.83
SCN4AP35499 RANP7-201ENST00000418085 644 ntBASIC3.61□□□□□ -1.83
SCN4AP35499 AC013268.2-201ENST00000420753 337 ntBASIC3.61□□□□□ -1.83
SCN4AP35499 ANKRD30BP3-201ENST00000444850 1070 ntBASIC3.61□□□□□ -1.83
SCN4AP35499 RPS17P11-201ENST00000474297 293 ntBASIC3.61□□□□□ -1.83
SCN4AP35499 SNORA70.19-201ENST00000516717 90 ntBASIC3.61□□□□□ -1.83
SCN4AP35499 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC3.61□□□□□ -1.83
SCN4AP35499 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.61□□□□□ -1.83
SCN4AP35499 AC011492.1-201ENST00000600023 315 ntBASIC3.61□□□□□ -1.83
SCN4AP35499 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.61□□□□□ -1.83
SCN4AP35499 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC3.61□□□□□ -1.83
SCN4AP35499 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
SCN4AP35499 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
SCN4AP35499 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
SCN4AP35499 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
SCN4AP35499 RNU6-283P-201ENST00000364788 107 ntBASIC3.6□□□□□ -1.83
SCN4AP35499 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.6□□□□□ -1.83
SCN4AP35499 MIR34A-201ENST00000385130 110 ntBASIC3.6□□□□□ -1.83
SCN4AP35499 MIR9-1-201ENST00000385198 89 ntBASIC3.6□□□□□ -1.83
SCN4AP35499 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.6□□□□□ -1.83
SCN4AP35499 snoU13.26-201ENST00000459452 105 ntBASIC3.6□□□□□ -1.83
SCN4AP35499 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC3.6□□□□□ -1.83
SCN4AP35499 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.6□□□□□ -1.83
SCN4AP35499 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.6□□□□□ -1.83
SCN4AP35499 CYCSP39-201ENST00000565821 309 ntBASIC3.6□□□□□ -1.83
SCN4AP35499 AC115989.2-201ENST00000578640 563 ntBASIC3.6□□□□□ -1.83
SCN4AP35499 AC008507.1-201ENST00000587506 734 ntBASIC3.6□□□□□ -1.83
SCN4AP35499 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.6□□□□□ -1.83
SCN4AP35499 AL035413.2-201ENST00000604801 525 ntBASIC3.6□□□□□ -1.83
SCN4AP35499 AC064859.1-201ENST00000624741 174 ntBASIC3.6□□□□□ -1.83
SCN4AP35499 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SCN4AP35499 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SCN4AP35499 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
SCN4AP35499 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
SCN4AP35499 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.6□□□□□ -1.83
SCN4AP35499 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
SCN4AP35499 MIR30E-201ENST00000362104 92 ntBASIC3.6□□□□□ -1.83
SCN4AP35499 SNORA9.2-201ENST00000365361 133 ntBASIC3.6□□□□□ -1.83
SCN4AP35499 AC104297.1-201ENST00000393779 870 ntBASIC3.6□□□□□ -1.83
SCN4AP35499 RNU6-564P-201ENST00000410983 104 ntBASIC3.6□□□□□ -1.83
SCN4AP35499 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.6□□□□□ -1.83
SCN4AP35499 AL592148.1-201ENST00000413568 445 ntBASIC3.6□□□□□ -1.83
SCN4AP35499 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC3.6□□□□□ -1.83
SCN4AP35499 CST9LP2-201ENST00000437612 320 ntBASIC3.6□□□□□ -1.83
SCN4AP35499 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.6□□□□□ -1.83
SCN4AP35499 AP002884.2-201ENST00000471647 395 ntBASIC3.6□□□□□ -1.83
SCN4AP35499 TRBV8-1-201ENST00000481590 279 ntBASIC3.6□□□□□ -1.83
SCN4AP35499 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC3.6□□□□□ -1.83
SCN4AP35499 RNU4-29P-201ENST00000515943 174 ntBASIC3.6□□□□□ -1.83
SCN4AP35499 RN7SKP272-201ENST00000516988 232 ntBASIC3.6□□□□□ -1.83
SCN4AP35499 AC109329.2-201ENST00000519658 482 ntBASIC3.6□□□□□ -1.83
SCN4AP35499 AP000916.1-201ENST00000533869 835 ntBASIC3.6□□□□□ -1.83
SCN4AP35499 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC3.6□□□□□ -1.83
SCN4AP35499 MIR5047-201ENST00000579212 100 ntBASIC3.6□□□□□ -1.83
SCN4AP35499 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.6□□□□□ -1.83
SCN4AP35499 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
SCN4AP35499 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
SCN4AP35499 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
SCN4AP35499 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.59□□□□□ -1.83
SCN4AP35499 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
SCN4AP35499 AC017002.4-201ENST00000604721 1525 ntBASIC3.59□□□□□ -1.83
SCN4AP35499 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
SCN4AP35499 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
SCN4AP35499 AL583834.1-201ENST00000406943 343 ntBASIC3.59□□□□□ -1.83
SCN4AP35499 RNU2-52P-201ENST00000410680 190 ntBASIC3.59□□□□□ -1.83
SCN4AP35499 RNU6-943P-201ENST00000516960 98 ntBASIC3.59□□□□□ -1.83
SCN4AP35499 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC3.59□□□□□ -1.83
SCN4AP35499 AC106734.1-201ENST00000568646 663 ntBASIC3.59□□□□□ -1.83
SCN4AP35499 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.59□□□□□ -1.83
SCN4AP35499 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
SCN4AP35499 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC3.59□□□□□ -1.83
SCN4AP35499 AC009313.2-201ENST00000417893 1941 ntBASIC3.59□□□□□ -1.84
SCN4AP35499 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
SCN4AP35499 AC134882.1-201ENST00000603738 1676 ntBASIC3.58□□□□□ -1.84
SCN4AP35499 MTCO3P31-201ENST00000405526 789 ntBASIC3.58□□□□□ -1.84
SCN4AP35499 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC3.58□□□□□ -1.84
SCN4AP35499 RPS12P23-201ENST00000419579 400 ntBASIC3.58□□□□□ -1.84
SCN4AP35499 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
SCN4AP35499 AL138787.1-202ENST00000437804 898 ntBASIC3.58□□□□□ -1.84
SCN4AP35499 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.58□□□□□ -1.84
SCN4AP35499 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms