Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RNU6-346P-201ENST00000516288 111 ntBASIC5.55□□□□□ -1.52
COL8A1P27658 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC5.55□□□□□ -1.52
COL8A1P27658 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC5.55□□□□□ -1.52
COL8A1P27658 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC5.55□□□□□ -1.52
COL8A1P27658 FAM27E4-201ENST00000605259 342 ntBASIC5.55□□□□□ -1.52
COL8A1P27658 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC5.55□□□□□ -1.52
COL8A1P27658 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL8A1P27658 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL8A1P27658 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC5.55□□□□□ -1.52
COL8A1P27658 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC5.55□□□□□ -1.52
COL8A1P27658 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
COL8A1P27658 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC5.55□□□□□ -1.52
COL8A1P27658 ZNF559-ZNF177-203ENST00000541595 2435 ntAPPRIS P3 TSL 2 BASIC5.55□□□□□ -1.52
COL8A1P27658 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
COL8A1P27658 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
COL8A1P27658 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
COL8A1P27658 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL8A1P27658 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL8A1P27658 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC5.54□□□□□ -1.52
COL8A1P27658 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
COL8A1P27658 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC5.54□□□□□ -1.52
COL8A1P27658 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL8A1P27658 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
COL8A1P27658 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL8A1P27658 TMEFF2-203ENST00000409056 3364 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL8A1P27658 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL8A1P27658 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL8A1P27658 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL8A1P27658 OR2T7-201ENST00000641057 3463 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
COL8A1P27658 HIST1H2BA-201ENST00000274764 516 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
COL8A1P27658 RNU6-984P-201ENST00000363236 109 ntBASIC5.54□□□□□ -1.52
COL8A1P27658 RNU6-179P-201ENST00000363350 107 ntBASIC5.54□□□□□ -1.52
COL8A1P27658 RNU6-682P-201ENST00000363843 106 ntBASIC5.54□□□□□ -1.52
COL8A1P27658 Y_RNA.269-201ENST00000364685 89 ntBASIC5.54□□□□□ -1.52
COL8A1P27658 HMGB3P7-201ENST00000400214 611 ntBASIC5.54□□□□□ -1.52
COL8A1P27658 AL603910.2-201ENST00000407268 136 ntBASIC5.54□□□□□ -1.52
COL8A1P27658 RNU6-1203P-201ENST00000410703 110 ntBASIC5.54□□□□□ -1.52
COL8A1P27658 RNU4-46P-201ENST00000410818 138 ntBASIC5.54□□□□□ -1.52
COL8A1P27658 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC5.54□□□□□ -1.52
COL8A1P27658 AC092017.2-201ENST00000427600 362 ntBASIC5.54□□□□□ -1.52
COL8A1P27658 AL360081.1-201ENST00000428299 555 ntBASIC5.54□□□□□ -1.52
COL8A1P27658 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL8A1P27658 FTH1P2-201ENST00000466086 412 ntBASIC5.54□□□□□ -1.52
COL8A1P27658 RN7SL369P-201ENST00000477138 299 ntBASIC5.54□□□□□ -1.52
COL8A1P27658 AC023818.1-201ENST00000498379 384 ntBASIC5.54□□□□□ -1.52
COL8A1P27658 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC5.54□□□□□ -1.52
COL8A1P27658 RNU7-200P-201ENST00000516105 62 ntBASIC5.54□□□□□ -1.52
COL8A1P27658 RNU6-397P-201ENST00000516226 104 ntBASIC5.54□□□□□ -1.52
COL8A1P27658 RNU6-62P-201ENST00000516526 102 ntBASIC5.54□□□□□ -1.52
COL8A1P27658 RNA5SP434-201ENST00000516647 121 ntBASIC5.54□□□□□ -1.52
COL8A1P27658 RN7SKP283-201ENST00000517197 270 ntBASIC5.54□□□□□ -1.52
COL8A1P27658 IGKV2-38-201ENST00000517443 247 ntBASIC5.54□□□□□ -1.52
COL8A1P27658 AP001858.2-201ENST00000536213 601 ntBASIC5.54□□□□□ -1.52
COL8A1P27658 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC5.54□□□□□ -1.52
COL8A1P27658 AC063926.1-201ENST00000539532 415 ntTSL 2 BASIC5.54□□□□□ -1.52
COL8A1P27658 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC5.54□□□□□ -1.52
COL8A1P27658 SETP2-201ENST00000553886 926 ntBASIC5.54□□□□□ -1.52
COL8A1P27658 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC5.54□□□□□ -1.52
COL8A1P27658 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC5.54□□□□□ -1.52
COL8A1P27658 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC5.54□□□□□ -1.52
COL8A1P27658 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC5.54□□□□□ -1.52
COL8A1P27658 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC5.54□□□□□ -1.52
COL8A1P27658 AC025857.2-201ENST00000602711 238 ntBASIC5.54□□□□□ -1.52
COL8A1P27658 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC5.54□□□□□ -1.52
COL8A1P27658 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL8A1P27658 AC073869.10-201ENST00000642016 354 ntBASIC5.54□□□□□ -1.52
COL8A1P27658 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC5.54□□□□□ -1.52
COL8A1P27658 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
COL8A1P27658 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC5.54□□□□□ -1.52
COL8A1P27658 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL8A1P27658 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL8A1P27658 GABRB2-209ENST00000612710 2470 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL8A1P27658 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL8A1P27658 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL8A1P27658 INTS12-202ENST00000394735 1927 ntTSL 5 BASIC5.54□□□□□ -1.52
COL8A1P27658 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
COL8A1P27658 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL8A1P27658 PRUNE1-202ENST00000368934 2214 ntTSL 2 BASIC5.54□□□□□ -1.52
COL8A1P27658 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC5.54□□□□□ -1.52
COL8A1P27658 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL8A1P27658 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL8A1P27658 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC5.53□□□□□ -1.52
COL8A1P27658 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL8A1P27658 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL8A1P27658 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL8A1P27658 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
COL8A1P27658 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL8A1P27658 AKR1C2-201ENST00000380753 3756 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL8A1P27658 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL8A1P27658 CLNK-204ENST00000515667 4180 ntAPPRIS ALT2 TSL 3 BASIC5.53□□□□□ -1.52
COL8A1P27658 SNORD62.1-201ENST00000362541 86 ntBASIC5.53□□□□□ -1.52
COL8A1P27658 RNA5SP346-201ENST00000363541 121 ntBASIC5.53□□□□□ -1.52
COL8A1P27658 RNU4-42P-201ENST00000364738 142 ntBASIC5.53□□□□□ -1.52
COL8A1P27658 RNU6-171P-201ENST00000384354 107 ntBASIC5.53□□□□□ -1.52
COL8A1P27658 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
COL8A1P27658 RNU4-34P-201ENST00000410431 124 ntBASIC5.53□□□□□ -1.52
COL8A1P27658 RN7SKP235-201ENST00000410662 305 ntBASIC5.53□□□□□ -1.52
COL8A1P27658 RN7SKP126-201ENST00000411143 300 ntBASIC5.53□□□□□ -1.52
COL8A1P27658 SDHDP6-201ENST00000414693 480 ntBASIC5.53□□□□□ -1.52
COL8A1P27658 RPL36AP36-201ENST00000418616 301 ntBASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms