Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 MIR6075-201ENST00000620782 95 ntBASIC3.89□□□□□ -1.79
CLDN3O15551 AC243312.2-201ENST00000623340 601 ntBASIC3.89□□□□□ -1.79
CLDN3O15551 AC244258.1-201ENST00000637553 1071 ntBASIC3.89□□□□□ -1.79
CLDN3O15551 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.89□□□□□ -1.79
CLDN3O15551 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CLDN3O15551 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
CLDN3O15551 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.89□□□□□ -1.79
CLDN3O15551 MTCO1P24-201ENST00000515438 1558 ntBASIC3.89□□□□□ -1.79
CLDN3O15551 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
CLDN3O15551 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CLDN3O15551 TMEM161BP1-201ENST00000457388 1457 ntBASIC3.88□□□□□ -1.79
CLDN3O15551 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
CLDN3O15551 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.88□□□□□ -1.79
CLDN3O15551 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC3.88□□□□□ -1.79
CLDN3O15551 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CLDN3O15551 RNU6-481P-201ENST00000384194 107 ntBASIC3.88□□□□□ -1.79
CLDN3O15551 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC3.88□□□□□ -1.79
CLDN3O15551 U3.39-201ENST00000408569 239 ntBASIC3.88□□□□□ -1.79
CLDN3O15551 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.88□□□□□ -1.79
CLDN3O15551 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CLDN3O15551 AC002075.2-201ENST00000425207 252 ntBASIC3.88□□□□□ -1.79
CLDN3O15551 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.88□□□□□ -1.79
CLDN3O15551 AC006989.1-201ENST00000427212 131 ntBASIC3.88□□□□□ -1.79
CLDN3O15551 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.88□□□□□ -1.79
CLDN3O15551 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CLDN3O15551 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.88□□□□□ -1.79
CLDN3O15551 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC3.88□□□□□ -1.79
CLDN3O15551 AL138799.3-201ENST00000438968 350 ntBASIC3.88□□□□□ -1.79
CLDN3O15551 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.88□□□□□ -1.79
CLDN3O15551 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.88□□□□□ -1.79
CLDN3O15551 AC023598.1-201ENST00000472521 361 ntBASIC3.88□□□□□ -1.79
CLDN3O15551 TMED11P-201ENST00000479478 690 ntBASIC3.88□□□□□ -1.79
CLDN3O15551 MTND3P24-201ENST00000506306 329 ntBASIC3.88□□□□□ -1.79
CLDN3O15551 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC3.88□□□□□ -1.79
CLDN3O15551 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC3.88□□□□□ -1.79
CLDN3O15551 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
CLDN3O15551 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.88□□□□□ -1.79
CLDN3O15551 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC3.88□□□□□ -1.79
CLDN3O15551 AGGF1P8-201ENST00000562979 1000 ntBASIC3.88□□□□□ -1.79
CLDN3O15551 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.88□□□□□ -1.79
CLDN3O15551 MIR3922-201ENST00000585192 84 ntBASIC3.88□□□□□ -1.79
CLDN3O15551 VN1R88P-201ENST00000596787 292 ntBASIC3.88□□□□□ -1.79
CLDN3O15551 AC110741.2-201ENST00000605278 268 ntBASIC3.88□□□□□ -1.79
CLDN3O15551 MIR92B-201ENST00000607575 96 ntBASIC3.88□□□□□ -1.79
CLDN3O15551 AL392048.1-201ENST00000613946 534 ntBASIC3.88□□□□□ -1.79
CLDN3O15551 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
CLDN3O15551 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC3.88□□□□□ -1.79
CLDN3O15551 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
CLDN3O15551 ELL2P4-201ENST00000446870 1376 ntBASIC3.88□□□□□ -1.79
CLDN3O15551 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
CLDN3O15551 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CLDN3O15551 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
CLDN3O15551 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CLDN3O15551 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC3.87□□□□□ -1.79
CLDN3O15551 MIR423-201ENST00000362201 94 ntBASIC3.87□□□□□ -1.79
CLDN3O15551 RNA5SP119-201ENST00000362715 117 ntBASIC3.87□□□□□ -1.79
CLDN3O15551 RNA5SP42-201ENST00000364278 115 ntBASIC3.87□□□□□ -1.79
CLDN3O15551 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.87□□□□□ -1.79
CLDN3O15551 AC069218.2-201ENST00000411665 344 ntBASIC3.87□□□□□ -1.79
CLDN3O15551 DBIP2-201ENST00000419076 262 ntBASIC3.87□□□□□ -1.79
CLDN3O15551 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.87□□□□□ -1.79
CLDN3O15551 AL590762.3-201ENST00000436372 640 ntBASIC3.87□□□□□ -1.79
CLDN3O15551 PPIAP17-201ENST00000438507 471 ntBASIC3.87□□□□□ -1.79
CLDN3O15551 AC092641.1-201ENST00000440229 772 ntBASIC3.87□□□□□ -1.79
CLDN3O15551 ZNF736P6Y-201ENST00000447526 1213 ntBASIC3.87□□□□□ -1.79
CLDN3O15551 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC3.87□□□□□ -1.79
CLDN3O15551 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC3.87□□□□□ -1.79
CLDN3O15551 CYCSP20-201ENST00000473154 315 ntBASIC3.87□□□□□ -1.79
CLDN3O15551 AC087879.1-201ENST00000474343 374 ntBASIC3.87□□□□□ -1.79
CLDN3O15551 RPS27P23-201ENST00000487608 251 ntBASIC3.87□□□□□ -1.79
CLDN3O15551 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.87□□□□□ -1.79
CLDN3O15551 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.87□□□□□ -1.79
CLDN3O15551 TMEM248P1-201ENST00000510579 951 ntBASIC3.87□□□□□ -1.79
CLDN3O15551 RNU6-488P-201ENST00000515918 99 ntBASIC3.87□□□□□ -1.79
CLDN3O15551 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC3.87□□□□□ -1.79
CLDN3O15551 HMGB1P1-201ENST00000522557 636 ntBASIC3.87□□□□□ -1.79
CLDN3O15551 OR5AP1P-201ENST00000529730 940 ntBASIC3.87□□□□□ -1.79
CLDN3O15551 CASP1-212ENST00000531166 300 ntTSL 5 BASIC3.87□□□□□ -1.79
CLDN3O15551 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
CLDN3O15551 AP000916.1-201ENST00000533869 835 ntBASIC3.87□□□□□ -1.79
CLDN3O15551 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.87□□□□□ -1.79
CLDN3O15551 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC3.87□□□□□ -1.79
CLDN3O15551 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.87□□□□□ -1.79
CLDN3O15551 AC009101.1-201ENST00000568135 242 ntBASIC3.87□□□□□ -1.79
CLDN3O15551 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC3.87□□□□□ -1.79
CLDN3O15551 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.87□□□□□ -1.79
CLDN3O15551 AC007566.2-201ENST00000603642 413 ntBASIC3.87□□□□□ -1.79
CLDN3O15551 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.87□□□□□ -1.79
CLDN3O15551 AC092354.2-201ENST00000607786 514 ntBASIC3.87□□□□□ -1.79
CLDN3O15551 AL391261.4-201ENST00000616012 481 ntBASIC3.87□□□□□ -1.79
CLDN3O15551 U73479.1-201ENST00000618062 168 ntBASIC3.87□□□□□ -1.79
CLDN3O15551 U4.6-201ENST00000621618 127 ntBASIC3.87□□□□□ -1.79
CLDN3O15551 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC3.87□□□□□ -1.79
CLDN3O15551 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
CLDN3O15551 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
CLDN3O15551 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CLDN3O15551 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
CLDN3O15551 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
CLDN3O15551 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
CLDN3O15551 SNORA71.3-201ENST00000362582 128 ntBASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms