Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 AC079741.1-201ENST00000321498 212 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 AL590240.1-201ENST00000334118 313 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 RN7SKP224-201ENST00000364140 325 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 RNU6-1293P-201ENST00000384077 107 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 SNORA51.6-201ENST00000384151 125 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 SNORA75-201ENST00000384158 137 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 RPS24P12-201ENST00000402084 394 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 AL356473.1-201ENST00000406203 1408 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 RN7SKP247-201ENST00000411094 308 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 RSU1P3-201ENST00000412878 835 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 FAR2P2-201ENST00000413041 594 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 RPL17P12-201ENST00000413391 526 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 HMGB1P11-201ENST00000413899 637 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 TRAPPC2P10-201ENST00000415662 323 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 AC119751.6-201ENST00000416712 186 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 AC004448.2-201ENST00000422360 586 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 FAR2P4-202ENST00000425399 584 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 OR5BE1P-201ENST00000425977 939 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 RPL36P19-201ENST00000430744 301 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 AC005154.2-201ENST00000438110 379 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 SAGE4P-201ENST00000442271 3381 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 AC079168.2-201ENST00000453977 416 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 TRBV26-201ENST00000456572 344 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 RPS15AP17-201ENST00000470598 390 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 AC087879.1-201ENST00000474343 374 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 RPL12P20-201ENST00000475538 479 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 AC005726.1-201ENST00000494679 427 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 SCARNA22-201ENST00000503991 125 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 AC021678.1-201ENST00000505195 936 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 CDC42P4-201ENST00000510507 563 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 AC010625.1-201ENST00000511296 403 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 EIF1P4-201ENST00000572664 335 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 MIR5186-201ENST00000577504 120 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 AP000403.1-201ENST00000603349 851 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 RNU6-156P-201ENST00000621869 107 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 OR5BE1P-202ENST00000641168 1176 ntBASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
PTCHD3Q3KNS1 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.59□□□□□ -1.68
PTCHD3Q3KNS1 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
PTCHD3Q3KNS1 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.68
PTCHD3Q3KNS1 AL672167.1-203ENST00000641299 2975 ntBASIC4.59□□□□□ -1.68
PTCHD3Q3KNS1 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 RNU6-178P-201ENST00000384631 104 ntBASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 MIR141-201ENST00000384975 95 ntBASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 MIR298-201ENST00000401212 88 ntBASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 MTCO1P21-201ENST00000416634 589 ntBASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 BX510359.2-201ENST00000417920 305 ntBASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 RPL21P32-201ENST00000419877 477 ntBASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 RPS27AP14-201ENST00000422868 454 ntBASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 MTND1P28-201ENST00000435623 950 ntBASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 AC104651.2-201ENST00000447549 528 ntBASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 DNAJC19P1-201ENST00000455312 319 ntBASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 SNRPFP4-201ENST00000456366 242 ntBASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 MEMO1P3-201ENST00000459811 302 ntBASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 AC108751.2-201ENST00000469993 231 ntBASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 AC010683.1-201ENST00000473673 378 ntBASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 RN7SL860P-201ENST00000473738 223 ntBASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 MTND5P4-201ENST00000514978 288 ntBASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 AC104057.1-201ENST00000515547 497 ntBASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 RN7SKP46-201ENST00000515942 234 ntBASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 RNU6-150P-201ENST00000516237 95 ntBASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 AC107918.3-201ENST00000533272 382 ntBASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms