Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 RNU6-283P-201ENST00000364788 107 ntBASIC2.09□□□□□ -2.08
PRKDCP78527 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC2.09□□□□□ -2.08
PRKDCP78527 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
PRKDCP78527 Y_RNA.595-201ENST00000410403 105 ntBASIC2.09□□□□□ -2.08
PRKDCP78527 NIPA2P5-201ENST00000452282 464 ntBASIC2.09□□□□□ -2.08
PRKDCP78527 RNU4ATAC6P-201ENST00000516592 126 ntBASIC2.09□□□□□ -2.08
PRKDCP78527 OR5AP1P-201ENST00000529730 940 ntBASIC2.09□□□□□ -2.08
PRKDCP78527 AL596275.2-204ENST00000641628 552 ntBASIC2.09□□□□□ -2.08
PRKDCP78527 AL596275.2-206ENST00000641957 626 ntBASIC2.09□□□□□ -2.08
PRKDCP78527 AL139039.1-201ENST00000401900 692 ntBASIC2.08□□□□□ -2.08
PRKDCP78527 GLS-203ENST00000409215 632 ntTSL 4 BASIC2.08□□□□□ -2.08
PRKDCP78527 AC126124.2-201ENST00000413542 321 ntBASIC2.08□□□□□ -2.08
PRKDCP78527 RPL30P2-201ENST00000414021 291 ntBASIC2.08□□□□□ -2.08
PRKDCP78527 USP12PY-201ENST00000427677 1064 ntBASIC2.08□□□□□ -2.08
PRKDCP78527 KATNBL1P2-201ENST00000433311 835 ntBASIC2.08□□□□□ -2.08
PRKDCP78527 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC2.08□□□□□ -2.08
PRKDCP78527 HMGB3P14-201ENST00000494195 599 ntBASIC2.08□□□□□ -2.08
PRKDCP78527 AC092436.1-201ENST00000506450 503 ntBASIC2.08□□□□□ -2.08
PRKDCP78527 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC2.08□□□□□ -2.08
PRKDCP78527 RN7SKP82-201ENST00000516786 223 ntBASIC2.08□□□□□ -2.08
PRKDCP78527 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC2.08□□□□□ -2.08
PRKDCP78527 AC015917.1-201ENST00000579654 510 ntBASIC2.08□□□□□ -2.08
PRKDCP78527 MIR4727-201ENST00000622232 55 ntBASIC2.08□□□□□ -2.08
PRKDCP78527 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
PRKDCP78527 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
PRKDCP78527 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC2.08□□□□□ -2.08
PRKDCP78527 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
PRKDCP78527 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC2.08□□□□□ -2.08
PRKDCP78527 AC022795.1-201ENST00000473808 480 ntBASIC2.08□□□□□ -2.08
PRKDCP78527 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.08□□□□□ -2.08
PRKDCP78527 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.08□□□□□ -2.08
PRKDCP78527 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC2.08□□□□□ -2.08
PRKDCP78527 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
PRKDCP78527 CR381670.1-201ENST00000624291 1693 ntBASIC2.08□□□□□ -2.08
PRKDCP78527 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC2.08□□□□□ -2.08
PRKDCP78527 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
PRKDCP78527 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC2.08□□□□□ -2.08
PRKDCP78527 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC2.08□□□□□ -2.08
PRKDCP78527 SNORA80E-201ENST00000384744 137 ntBASIC2.08□□□□□ -2.08
PRKDCP78527 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.08□□□□□ -2.08
PRKDCP78527 BTF3L4P4-201ENST00000506381 449 ntBASIC2.08□□□□□ -2.08
PRKDCP78527 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC2.08□□□□□ -2.08
PRKDCP78527 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
PRKDCP78527 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
PRKDCP78527 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC2.08□□□□□ -2.08
PRKDCP78527 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
PRKDCP78527 AL049840.6-202ENST00000603373 279 ntBASIC2.08□□□□□ -2.08
PRKDCP78527 AC103810.6-201ENST00000606708 136 ntBASIC2.08□□□□□ -2.08
PRKDCP78527 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
PRKDCP78527 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC2.08□□□□□ -2.08
PRKDCP78527 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
PRKDCP78527 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
PRKDCP78527 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
PRKDCP78527 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC2.07□□□□□ -2.08
PRKDCP78527 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
PRKDCP78527 MIR518C-201ENST00000384822 101 ntBASIC2.07□□□□□ -2.08
PRKDCP78527 HMGN2P8-201ENST00000391458 268 ntBASIC2.07□□□□□ -2.08
PRKDCP78527 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.07□□□□□ -2.08
PRKDCP78527 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC2.07□□□□□ -2.08
PRKDCP78527 AC010401.1-201ENST00000463867 348 ntBASIC2.07□□□□□ -2.08
PRKDCP78527 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC2.07□□□□□ -2.08
PRKDCP78527 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC2.07□□□□□ -2.08
PRKDCP78527 AC009063.1-201ENST00000563342 702 ntBASIC2.07□□□□□ -2.08
PRKDCP78527 PISRT1-201ENST00000626175 531 ntBASIC2.07□□□□□ -2.08
PRKDCP78527 HSPA8P1-201ENST00000425843 1833 ntBASIC2.07□□□□□ -2.08
PRKDCP78527 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
PRKDCP78527 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.07□□□□□ -2.08
PRKDCP78527 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC2.07□□□□□ -2.08
PRKDCP78527 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC2.07□□□□□ -2.08
PRKDCP78527 AL353997.5-201ENST00000618886 171 ntBASIC2.07□□□□□ -2.08
PRKDCP78527 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.07□□□□□ -2.08
PRKDCP78527 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC2.07□□□□□ -2.08
PRKDCP78527 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC2.07□□□□□ -2.08
PRKDCP78527 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
PRKDCP78527 RNU4-53P-201ENST00000410828 140 ntBASIC2.07□□□□□ -2.08
PRKDCP78527 RNA5SP31-201ENST00000411144 127 ntBASIC2.07□□□□□ -2.08
PRKDCP78527 SNORA31.21-201ENST00000517180 77 ntBASIC2.07□□□□□ -2.08
PRKDCP78527 AP003102.1-201ENST00000525638 661 ntBASIC2.07□□□□□ -2.08
PRKDCP78527 CKS1BP1-201ENST00000555221 240 ntBASIC2.07□□□□□ -2.08
PRKDCP78527 AP005262.1-201ENST00000582646 997 ntBASIC2.07□□□□□ -2.08
PRKDCP78527 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC2.07□□□□□ -2.08
PRKDCP78527 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.07□□□□□ -2.08
PRKDCP78527 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
PRKDCP78527 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
PRKDCP78527 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.07□□□□□ -2.08
PRKDCP78527 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC2.07□□□□□ -2.08
PRKDCP78527 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC2.07□□□□□ -2.08
PRKDCP78527 RNU1-112P-201ENST00000364401 164 ntBASIC2.06□□□□□ -2.08
PRKDCP78527 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC2.06□□□□□ -2.08
PRKDCP78527 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC2.06□□□□□ -2.08
PRKDCP78527 AC010307.1-201ENST00000467206 836 ntBASIC2.06□□□□□ -2.08
PRKDCP78527 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC2.06□□□□□ -2.08
PRKDCP78527 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC2.06□□□□□ -2.08
PRKDCP78527 AC017007.4-201ENST00000503353 1352 ntBASIC2.06□□□□□ -2.08
PRKDCP78527 IDE-202ENST00000371581 4480 ntTSL 2 BASIC2.06□□□□□ -2.08
PRKDCP78527 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC2.06□□□□□ -2.08
PRKDCP78527 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.06□□□□□ -2.08
PRKDCP78527 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC2.06□□□□□ -2.08
PRKDCP78527 AC091564.4-201ENST00000533934 2194 ntBASIC2.06□□□□□ -2.08
PRKDCP78527 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC2.06□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms