Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RNU6-416P-201ENST00000516265 103 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 Y_RNA.701-201ENST00000516812 110 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.05□□□□□ -1.6
USP39Q53GS9 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5.05□□□□□ -1.6
USP39Q53GS9 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
USP39Q53GS9 TOMM20P2-201ENST00000540082 421 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 AK6P1-201ENST00000540219 478 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC5.05□□□□□ -1.6
USP39Q53GS9 PARP1P2-201ENST00000556806 195 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 AC091489.2-201ENST00000566263 604 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 RPL26P30-202ENST00000602923 645 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC5.05□□□□□ -1.6
USP39Q53GS9 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC5.05□□□□□ -1.6
USP39Q53GS9 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC5.05□□□□□ -1.6
USP39Q53GS9 AC010338.1-201ENST00000621823 717 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
USP39Q53GS9 AC006210.2-201ENST00000367074 1545 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 AC104623.2-202ENST00000623477 4002 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC5.05□□□□□ -1.6
USP39Q53GS9 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
USP39Q53GS9 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
USP39Q53GS9 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.05□□□□□ -1.6
USP39Q53GS9 CASC19-284ENST00000642142 1868 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
USP39Q53GS9 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
USP39Q53GS9 MTCO1P6-201ENST00000481192 1384 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
USP39Q53GS9 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
USP39Q53GS9 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
USP39Q53GS9 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
USP39Q53GS9 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
USP39Q53GS9 AL445437.1-201ENST00000623157 3087 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
USP39Q53GS9 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
USP39Q53GS9 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
USP39Q53GS9 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
USP39Q53GS9 AC010300.1-201ENST00000600671 5134 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 OR4K15-201ENST00000305051 1216 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 RNU5F-6P-201ENST00000362979 116 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 Y_RNA.263-201ENST00000364659 114 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
USP39Q53GS9 RNU6-780P-201ENST00000391030 104 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
USP39Q53GS9 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
USP39Q53GS9 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC5.04□□□□□ -1.6
USP39Q53GS9 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC5.04□□□□□ -1.6
USP39Q53GS9 AIMP1P1-201ENST00000418670 937 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 LINC00993-201ENST00000420453 540 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC5.04□□□□□ -1.6
USP39Q53GS9 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC5.04□□□□□ -1.6
USP39Q53GS9 AC099336.2-201ENST00000422457 254 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 AL513174.1-201ENST00000423182 629 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC5.04□□□□□ -1.6
USP39Q53GS9 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC5.04□□□□□ -1.6
USP39Q53GS9 AC073464.1-201ENST00000429823 534 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC5.04□□□□□ -1.6
USP39Q53GS9 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC5.04□□□□□ -1.6
USP39Q53GS9 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC5.04□□□□□ -1.6
USP39Q53GS9 RPS4XP4-201ENST00000443195 763 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC5.04□□□□□ -1.6
USP39Q53GS9 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC5.04□□□□□ -1.6
USP39Q53GS9 MTND1P18-201ENST00000448191 573 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC5.04□□□□□ -1.6
USP39Q53GS9 SLC25A18P1-201ENST00000449385 454 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 BX842559.2-201ENST00000451418 605 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC5.04□□□□□ -1.6
USP39Q53GS9 AC009963.2-201ENST00000453431 138 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC5.04□□□□□ -1.6
USP39Q53GS9 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC5.04□□□□□ -1.6
USP39Q53GS9 AC099560.2-201ENST00000457554 255 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC5.04□□□□□ -1.6
USP39Q53GS9 AP000797.1-201ENST00000478870 387 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC5.04□□□□□ -1.6
USP39Q53GS9 MRPS33P2-201ENST00000507850 322 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 AC104108.1-201ENST00000509930 412 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC5.04□□□□□ -1.6
USP39Q53GS9 RN7SKP92-201ENST00000517266 244 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
USP39Q53GS9 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
USP39Q53GS9 AP002748.2-201ENST00000528671 348 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 AC087276.1-201ENST00000529659 480 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC5.04□□□□□ -1.6
USP39Q53GS9 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC5.04□□□□□ -1.6
USP39Q53GS9 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC5.04□□□□□ -1.6
USP39Q53GS9 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC5.04□□□□□ -1.6
USP39Q53GS9 MIR5096-201ENST00000583713 70 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 SS18L2P2-201ENST00000583960 235 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 AC008752.3-201ENST00000588113 712 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 AC005261.5-201ENST00000596280 355 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 AC103792.1-201ENST00000603591 919 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 AC107214.2-201ENST00000608204 634 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 AC135507.2-201ENST00000612443 309 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 AC083809.1-201ENST00000615051 472 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 MIR6758-201ENST00000620653 63 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 FRG1KP-201ENST00000623592 341 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 AP003122.6-201ENST00000623831 495 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 AC009033.1-201ENST00000624279 431 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 AC024614.3-201ENST00000637860 256 ntBASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 125.1 ms