Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 BCRP9-201ENST00000605312 388 ntBASIC4.87□□□□□ -1.63
MSX2P35548 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC4.87□□□□□ -1.63
MSX2P35548 AC009233.1-201ENST00000616477 371 ntBASIC4.87□□□□□ -1.63
MSX2P35548 AC009159.1-201ENST00000618386 642 ntBASIC4.87□□□□□ -1.63
MSX2P35548 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC4.87□□□□□ -1.63
MSX2P35548 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.87□□□□□ -1.63
MSX2P35548 AC110994.2-201ENST00000635481 492 ntBASIC4.87□□□□□ -1.63
MSX2P35548 MIR3662-201ENST00000637030 95 ntBASIC4.87□□□□□ -1.63
MSX2P35548 AC112487.2-201ENST00000637950 304 ntBASIC4.87□□□□□ -1.63
MSX2P35548 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
MSX2P35548 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
MSX2P35548 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC4.87□□□□□ -1.63
MSX2P35548 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC4.87□□□□□ -1.63
MSX2P35548 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
MSX2P35548 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC4.87□□□□□ -1.63
MSX2P35548 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.87□□□□□ -1.63
MSX2P35548 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.87□□□□□ -1.63
MSX2P35548 AC009229.4-201ENST00000623854 1947 ntBASIC4.87□□□□□ -1.63
MSX2P35548 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
MSX2P35548 PHKBP1-201ENST00000450951 1951 ntBASIC4.87□□□□□ -1.63
MSX2P35548 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.87□□□□□ -1.63
MSX2P35548 ALB-219ENST00000621085 1418 ntTSL 5 BASIC4.87□□□□□ -1.63
MSX2P35548 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
MSX2P35548 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC4.87□□□□□ -1.63
MSX2P35548 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
MSX2P35548 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
MSX2P35548 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.86□□□□□ -1.63
MSX2P35548 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.86□□□□□ -1.63
MSX2P35548 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
MSX2P35548 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.86□□□□□ -1.63
MSX2P35548 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC4.86□□□□□ -1.63
MSX2P35548 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
MSX2P35548 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.86□□□□□ -1.63
MSX2P35548 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
MSX2P35548 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
MSX2P35548 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.86□□□□□ -1.63
MSX2P35548 RNU4-73P-201ENST00000363164 141 ntBASIC4.86□□□□□ -1.63
MSX2P35548 RNY4P34-201ENST00000364779 95 ntBASIC4.86□□□□□ -1.63
MSX2P35548 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
MSX2P35548 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
MSX2P35548 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
MSX2P35548 RPL31P1-201ENST00000398116 372 ntBASIC4.86□□□□□ -1.63
MSX2P35548 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
MSX2P35548 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC4.86□□□□□ -1.63
MSX2P35548 RNU6-195P-201ENST00000411352 109 ntBASIC4.86□□□□□ -1.63
MSX2P35548 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC4.86□□□□□ -1.63
MSX2P35548 RPS20P15-201ENST00000412792 311 ntBASIC4.86□□□□□ -1.63
MSX2P35548 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.86□□□□□ -1.63
MSX2P35548 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
MSX2P35548 LSM1P1-201ENST00000438629 273 ntBASIC4.86□□□□□ -1.63
MSX2P35548 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC4.86□□□□□ -1.63
MSX2P35548 RPS20P24-201ENST00000457473 361 ntBASIC4.86□□□□□ -1.63
MSX2P35548 RN7SL515P-201ENST00000463999 297 ntBASIC4.86□□□□□ -1.63
MSX2P35548 SIAH1P1-201ENST00000479411 923 ntBASIC4.86□□□□□ -1.63
MSX2P35548 LRRC34P2-201ENST00000514850 553 ntBASIC4.86□□□□□ -1.63
MSX2P35548 SCARNA21.2-201ENST00000516600 166 ntBASIC4.86□□□□□ -1.63
MSX2P35548 AC027308.1-201ENST00000517993 110 ntBASIC4.86□□□□□ -1.63
MSX2P35548 ARL2BPP5-201ENST00000523141 481 ntBASIC4.86□□□□□ -1.63
MSX2P35548 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC4.86□□□□□ -1.63
MSX2P35548 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC4.86□□□□□ -1.63
MSX2P35548 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC4.86□□□□□ -1.63
MSX2P35548 CBX3P5-201ENST00000552017 521 ntBASIC4.86□□□□□ -1.63
MSX2P35548 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC4.86□□□□□ -1.63
MSX2P35548 IGBP1P1-201ENST00000554337 1009 ntBASIC4.86□□□□□ -1.63
MSX2P35548 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
MSX2P35548 AP001180.3-201ENST00000582221 145 ntBASIC4.86□□□□□ -1.63
MSX2P35548 MIR4637-201ENST00000582405 84 ntBASIC4.86□□□□□ -1.63
MSX2P35548 RPL27-207ENST00000590864 569 ntTSL 2 BASIC4.86□□□□□ -1.63
MSX2P35548 AC022916.3-201ENST00000592961 742 ntBASIC4.86□□□□□ -1.63
MSX2P35548 RPL12P25-202ENST00000598100 674 ntBASIC4.86□□□□□ -1.63
MSX2P35548 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.86□□□□□ -1.63
MSX2P35548 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC4.86□□□□□ -1.63
MSX2P35548 AL136295.6-201ENST00000610486 658 ntBASIC4.86□□□□□ -1.63
MSX2P35548 AC243773.3-201ENST00000613270 256 ntBASIC4.86□□□□□ -1.63
MSX2P35548 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC4.86□□□□□ -1.63
MSX2P35548 MIR193BHG-214ENST00000641765 509 ntBASIC4.86□□□□□ -1.63
MSX2P35548 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
MSX2P35548 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.86□□□□□ -1.63
MSX2P35548 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
MSX2P35548 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.86□□□□□ -1.63
MSX2P35548 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC4.86□□□□□ -1.63
MSX2P35548 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
MSX2P35548 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
MSX2P35548 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
MSX2P35548 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
MSX2P35548 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
MSX2P35548 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
MSX2P35548 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
MSX2P35548 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
MSX2P35548 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC4.85□□□□□ -1.63
MSX2P35548 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
MSX2P35548 AC022031.1-201ENST00000585985 2593 ntBASIC4.85□□□□□ -1.63
MSX2P35548 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
MSX2P35548 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC4.85□□□□□ -1.63
MSX2P35548 AL138820.1-201ENST00000617901 5305 ntBASIC4.85□□□□□ -1.63
MSX2P35548 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
MSX2P35548 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC4.85□□□□□ -1.63
MSX2P35548 AL512646.1-201ENST00000269395 1077 ntBASIC4.85□□□□□ -1.63
MSX2P35548 OR11H4-201ENST00000315409 1082 ntBASIC4.85□□□□□ -1.63
MSX2P35548 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms