Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC5.12□□□□□ -1.59
SMARCA1P28370 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC5.12□□□□□ -1.59
SMARCA1P28370 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC5.12□□□□□ -1.59
SMARCA1P28370 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC5.12□□□□□ -1.59
SMARCA1P28370 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC5.12□□□□□ -1.59
SMARCA1P28370 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC5.12□□□□□ -1.59
SMARCA1P28370 RPL21P7-201ENST00000557463 483 ntBASIC5.12□□□□□ -1.59
SMARCA1P28370 HMGB3P26-201ENST00000560051 582 ntBASIC5.12□□□□□ -1.59
SMARCA1P28370 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC5.12□□□□□ -1.59
SMARCA1P28370 AL512347.1-201ENST00000566420 503 ntBASIC5.12□□□□□ -1.59
SMARCA1P28370 VN1R92P-201ENST00000598511 928 ntBASIC5.12□□□□□ -1.59
SMARCA1P28370 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC5.12□□□□□ -1.59
SMARCA1P28370 AC024560.3-201ENST00000608482 349 ntBASIC5.12□□□□□ -1.59
SMARCA1P28370 AC013562.2-201ENST00000611632 603 ntBASIC5.12□□□□□ -1.59
SMARCA1P28370 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC5.12□□□□□ -1.59
SMARCA1P28370 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC5.12□□□□□ -1.59
SMARCA1P28370 ACTR3BP2-202ENST00000623630 1338 ntBASIC5.12□□□□□ -1.59
SMARCA1P28370 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SMARCA1P28370 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SMARCA1P28370 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
SMARCA1P28370 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
SMARCA1P28370 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC5.12□□□□□ -1.59
SMARCA1P28370 SUPT16HP1-201ENST00000537175 3133 ntBASIC5.12□□□□□ -1.59
SMARCA1P28370 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SMARCA1P28370 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SMARCA1P28370 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
SMARCA1P28370 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SMARCA1P28370 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC5.11□□□□□ -1.59
SMARCA1P28370 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
SMARCA1P28370 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC5.11□□□□□ -1.59
SMARCA1P28370 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
SMARCA1P28370 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SMARCA1P28370 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SMARCA1P28370 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SMARCA1P28370 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
SMARCA1P28370 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC5.11□□□□□ -1.59
SMARCA1P28370 AC126323.6-202ENST00000568092 3511 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 AC008033.1-201ENST00000216407 1162 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SMARCA1P28370 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC5.11□□□□□ -1.59
SMARCA1P28370 Y_RNA.25-201ENST00000362528 102 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 RNU6-984P-201ENST00000363236 109 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 RNU6-216P-201ENST00000363282 104 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 RNA5SP391-201ENST00000363456 119 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 HSPD1P16-201ENST00000402302 394 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SMARCA1P28370 TPMTP3-201ENST00000411928 735 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 RPL7P8-201ENST00000411964 730 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC5.11□□□□□ -1.59
SMARCA1P28370 RPL18P10-201ENST00000425606 538 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC5.11□□□□□ -1.59
SMARCA1P28370 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC5.11□□□□□ -1.59
SMARCA1P28370 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC5.11□□□□□ -1.59
SMARCA1P28370 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC5.11□□□□□ -1.59
SMARCA1P28370 AL353706.1-201ENST00000436728 494 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC5.11□□□□□ -1.59
SMARCA1P28370 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC5.11□□□□□ -1.59
SMARCA1P28370 ATP5C1P1-201ENST00000441945 895 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC5.11□□□□□ -1.59
SMARCA1P28370 AC073587.1-201ENST00000447093 876 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC5.11□□□□□ -1.59
SMARCA1P28370 RPL23AP35-201ENST00000451906 501 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 RPL23AP24-201ENST00000458203 385 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 RPS27AP17-201ENST00000463344 455 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
SMARCA1P28370 MTND3P5-201ENST00000512798 333 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC5.11□□□□□ -1.59
SMARCA1P28370 AC022790.1-201ENST00000522872 204 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC5.11□□□□□ -1.59
SMARCA1P28370 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SMARCA1P28370 AC009643.1-201ENST00000532030 391 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC5.11□□□□□ -1.59
SMARCA1P28370 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC5.11□□□□□ -1.59
SMARCA1P28370 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC5.11□□□□□ -1.59
SMARCA1P28370 AC008759.1-201ENST00000589783 983 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 AC069304.2-201ENST00000605154 435 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 AC103591.3-201ENST00000608684 209 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 AC008121.2-201ENST00000614647 523 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
SMARCA1P28370 AC099063.3-201ENST00000642066 185 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 AC092104.1-201ENST00000497346 1441 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SMARCA1P28370 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC5.11□□□□□ -1.59
SMARCA1P28370 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
SMARCA1P28370 AC025031.4-201ENST00000621248 3271 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 NEAT1-202ENST00000501122 22743 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC5.11□□□□□ -1.59
SMARCA1P28370 EIF2AP4-201ENST00000424793 1781 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 AC074029.4-201ENST00000624796 1859 ntBASIC5.11□□□□□ -1.59
SMARCA1P28370 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
SMARCA1P28370 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC5.11□□□□□ -1.59
SMARCA1P28370 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SMARCA1P28370 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
SMARCA1P28370 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC5.1□□□□□ -1.59
SMARCA1P28370 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SMARCA1P28370 AL672167.1-206ENST00000356293 943 ntBASIC5.1□□□□□ -1.59
SMARCA1P28370 RNU4-75P-201ENST00000364621 146 ntBASIC5.1□□□□□ -1.59
SMARCA1P28370 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC5.1□□□□□ -1.59
SMARCA1P28370 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC5.1□□□□□ -1.59
SMARCA1P28370 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms